miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21886 5' -52.6 NC_004902.1 + 38533 0.66 0.780961
Target:  5'- cUCCCaggcaUCCauuGCCAuUGUCAAGUGACu -3'
miRNA:   3'- -AGGGag---AGG---CGGUuACAGUUCGUUGu -5'
21886 5' -52.6 NC_004902.1 + 11947 0.67 0.730457
Target:  5'- gUCUUCUCCGCCuccagccucucagCAAGCGACu -3'
miRNA:   3'- aGGGAGAGGCGGuuaca--------GUUCGUUGu -5'
21886 5' -52.6 NC_004902.1 + 30672 0.67 0.727138
Target:  5'- gCCUgCUgCGCCcuUGUCAaccaGGCAGCAa -3'
miRNA:   3'- aGGGaGAgGCGGuuACAGU----UCGUUGU- -5'
21886 5' -52.6 NC_004902.1 + 35101 0.67 0.727138
Target:  5'- gCCUgCUCCGCCuggGUCuccagcgccAGCAGCAu -3'
miRNA:   3'- aGGGaGAGGCGGuuaCAGu--------UCGUUGU- -5'
21886 5' -52.6 NC_004902.1 + 25065 1.1 0.001076
Target:  5'- aUCCCUCUCCGCCAAUGUCAAGCAACAa -3'
miRNA:   3'- -AGGGAGAGGCGGUUACAGUUCGUUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.