miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21888	3'	-55.7	NC_004902.1	+	13578	0.66	0.61133
	Target:  5'- uGGUCCAAccGCGGaCCCG-GCAGacaauuaauGCCa -3' miRNA:   3'- -CCAGGUUaaCGUC-GGGUaCGUC---------CGGa -5'
21888	3'	-55.7	NC_004902.1	+	7630	0.66	0.566388
	Target:  5'- -cUCCAGcaGguGUCCAUGCGgugcGGCCUu -3' miRNA:   3'- ccAGGUUaaCguCGGGUACGU----CCGGA- -5'
21888	3'	-55.7	NC_004902.1	+	12227	0.67	0.53324
	Target:  5'- aGUCCccuuGAUUGCaAGgUCAcGCAGGCCg -3' miRNA:   3'- cCAGG----UUAACG-UCgGGUaCGUCCGGa -5'
21888	3'	-55.7	NC_004902.1	+	10791	0.67	0.522341
	Target:  5'- cGGU-CAAUUGCAGCaCCAgGUAaGCCUc -3' miRNA:   3'- -CCAgGUUAACGUCG-GGUaCGUcCGGA- -5'
21888	3'	-55.7	NC_004902.1	+	34493	0.67	0.511528
	Target:  5'- gGGUCg---UGCAGCCCAgaugaUGCugucgccuGGCCg -3' miRNA:   3'- -CCAGguuaACGUCGGGU-----ACGu-------CCGGa -5'
21888	3'	-55.7	NC_004902.1	+	4860	0.67	0.501877
	Target:  5'- cGGUUaauAUUGaUAGCCCuggcggggacauguuUGCGGGCCUg -3' miRNA:   3'- -CCAGgu-UAAC-GUCGGGu--------------ACGUCCGGA- -5'
21888	3'	-55.7	NC_004902.1	+	30752	0.68	0.470313
	Target:  5'- uGUCCGAUUGCuGCCUGguugacaagggcgcaGCAGGCa- -3' miRNA:   3'- cCAGGUUAACGuCGGGUa--------------CGUCCGga -5'
21888	3'	-55.7	NC_004902.1	+	29898	0.7	0.381405
	Target:  5'- cGG-CCAcuucaccGCAGCCCG-GUAGGCCa -3' miRNA:   3'- -CCaGGUuaa----CGUCGGGUaCGUCCGGa -5'
21888	3'	-55.7	NC_004902.1	+	12592	0.77	0.130167
	Target:  5'- aGGUCCAGUguggaggaggcaGCAGCCCA-GCAGGUUg -3' miRNA:   3'- -CCAGGUUAa-----------CGUCGGGUaCGUCCGGa -5'
21888	3'	-55.7	NC_004902.1	+	26913	1.1	0.000432
	Target:  5'- aGGUCCAAUUGCAGCCCAUGCAGGCCUg -3' miRNA:   3'- -CCAGGUUAACGUCGGGUACGUCCGGA- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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