Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21891 | 3' | -52.8 | NC_004902.1 | + | 8218 | 0.66 | 0.723416 |
Target: 5'- cACuGuCGCUGCcaucACGGCAGCUaauccgucuGUUGCAa -3' miRNA: 3'- -UGuC-GCGAUGu---UGUCGUCGG---------UAACGU- -5' |
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21891 | 3' | -52.8 | NC_004902.1 | + | 34041 | 0.66 | 0.739097 |
Target: 5'- gGCAGCGCcugACAugucgaugcucaaggACAGCaagacAGCCAagGCGg -3' miRNA: 3'- -UGUCGCGa--UGU---------------UGUCG-----UCGGUaaCGU- -5' |
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21891 | 3' | -52.8 | NC_004902.1 | + | 36626 | 0.66 | 0.745747 |
Target: 5'- nACAGUcugaaccgGCUGCuGGCGGCAcuGCCcUUGCAa -3' miRNA: 3'- -UGUCG--------CGAUG-UUGUCGU--CGGuAACGU- -5' |
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21891 | 3' | -52.8 | NC_004902.1 | + | 38373 | 0.66 | 0.723416 |
Target: 5'- gGCAGcCGUguucucauuUACAACAGCAGCa--UGCc -3' miRNA: 3'- -UGUC-GCG---------AUGUUGUCGUCGguaACGu -5' |
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21891 | 3' | -52.8 | NC_004902.1 | + | 4404 | 0.66 | 0.723416 |
Target: 5'- gACAGUGCUGCccgaAGCAGCuacuacAGCCA--GCu -3' miRNA: 3'- -UGUCGCGAUG----UUGUCG------UCGGUaaCGu -5' |
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21891 | 3' | -52.8 | NC_004902.1 | + | 12257 | 0.66 | 0.700676 |
Target: 5'- -gGGCGaUUGCAguGCAGauaCAGUCAUUGCAg -3' miRNA: 3'- ugUCGC-GAUGU--UGUC---GUCGGUAACGU- -5' |
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21891 | 3' | -52.8 | NC_004902.1 | + | 41770 | 0.67 | 0.677637 |
Target: 5'- uCGGCGUUAUcACGGCAGCa---GCAa -3' miRNA: 3'- uGUCGCGAUGuUGUCGUCGguaaCGU- -5' |
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21891 | 3' | -52.8 | NC_004902.1 | + | 43643 | 0.67 | 0.642744 |
Target: 5'- aGCAGCaGCUcuuGCGGCAGCAGCUu----- -3' miRNA: 3'- -UGUCG-CGA---UGUUGUCGUCGGuaacgu -5' |
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21891 | 3' | -52.8 | NC_004902.1 | + | 21311 | 0.67 | 0.689187 |
Target: 5'- gGCGGCGCaGCAGaCAGCAGaCAccGCu -3' miRNA: 3'- -UGUCGCGaUGUU-GUCGUCgGUaaCGu -5' |
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21891 | 3' | -52.8 | NC_004902.1 | + | 8637 | 0.67 | 0.689187 |
Target: 5'- -uGGUGCUGCGuCGGCAGCUuccuaacgGCGa -3' miRNA: 3'- ugUCGCGAUGUuGUCGUCGGuaa-----CGU- -5' |
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21891 | 3' | -52.8 | NC_004902.1 | + | 17595 | 0.67 | 0.677637 |
Target: 5'- aGCAcGUGCUACAGCAguGCAGCag--GUAa -3' miRNA: 3'- -UGU-CGCGAUGUUGU--CGUCGguaaCGU- -5' |
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21891 | 3' | -52.8 | NC_004902.1 | + | 35741 | 0.67 | 0.642744 |
Target: 5'- -aGGCGCcACAGCGGUGGCaguaUGCAc -3' miRNA: 3'- ugUCGCGaUGUUGUCGUCGgua-ACGU- -5' |
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21891 | 3' | -52.8 | NC_004902.1 | + | 40477 | 0.67 | 0.689187 |
Target: 5'- cGCAGCGC-GCGA-AGCAGCaaggGCAg -3' miRNA: 3'- -UGUCGCGaUGUUgUCGUCGguaaCGU- -5' |
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21891 | 3' | -52.8 | NC_004902.1 | + | 39272 | 0.67 | 0.689187 |
Target: 5'- gGCAGCaGCaGCAcguGCAGCAGCaaa-GCAg -3' miRNA: 3'- -UGUCG-CGaUGU---UGUCGUCGguaaCGU- -5' |
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21891 | 3' | -52.8 | NC_004902.1 | + | 7048 | 0.68 | 0.596121 |
Target: 5'- gGCGGCGUUGCAAUA-CAGCCcuagUGUu -3' miRNA: 3'- -UGUCGCGAUGUUGUcGUCGGua--ACGu -5' |
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21891 | 3' | -52.8 | NC_004902.1 | + | 44255 | 0.69 | 0.516206 |
Target: 5'- gACAGUGCU--GACAG-AGCgGUUGCAa -3' miRNA: 3'- -UGUCGCGAugUUGUCgUCGgUAACGU- -5' |
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21891 | 3' | -52.8 | NC_004902.1 | + | 30432 | 0.69 | 0.516206 |
Target: 5'- -aAGCGUgGCAugcaGGCAGCCggUGCAg -3' miRNA: 3'- ugUCGCGaUGUug--UCGUCGGuaACGU- -5' |
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21891 | 3' | -52.8 | NC_004902.1 | + | 36663 | 0.69 | 0.531899 |
Target: 5'- gGCGGCGUggcaguagcuacugGCGACGGC-GCCAcgGCAc -3' miRNA: 3'- -UGUCGCGa-------------UGUUGUCGuCGGUaaCGU- -5' |
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21891 | 3' | -52.8 | NC_004902.1 | + | 6745 | 0.7 | 0.494122 |
Target: 5'- uGCAGCG----GGCAGCAGUUGUUGCAu -3' miRNA: 3'- -UGUCGCgaugUUGUCGUCGGUAACGU- -5' |
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21891 | 3' | -52.8 | NC_004902.1 | + | 19029 | 0.7 | 0.505112 |
Target: 5'- uGCAGcCGCUuuaccguCGACGGCAGCC--UGUAc -3' miRNA: 3'- -UGUC-GCGAu------GUUGUCGUCGGuaACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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