Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21893 | 5' | -55.1 | NC_004902.1 | + | 26512 | 0.67 | 0.564416 |
Target: 5'- uGAUCUUGCCgGCUAUCUGauccagcgCAUCCAg -3' miRNA: 3'- uCUGGAACGG-UGGUAGACa-------GUGGGUg -5' |
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21893 | 5' | -55.1 | NC_004902.1 | + | 14943 | 0.68 | 0.520389 |
Target: 5'- uAGACCgcagUUGCCGCCA-CUGcaccauaugCGCCUGCa -3' miRNA: 3'- -UCUGG----AACGGUGGUaGACa--------GUGGGUG- -5' |
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21893 | 5' | -55.1 | NC_004902.1 | + | 35812 | 0.68 | 0.509585 |
Target: 5'- cAGugCauacUGCCACCG-CUGUggCGCCUACg -3' miRNA: 3'- -UCugGa---ACGGUGGUaGACA--GUGGGUG- -5' |
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21893 | 5' | -55.1 | NC_004902.1 | + | 13249 | 0.71 | 0.352981 |
Target: 5'- uGACCUUG-CACCAUCUGauccugCACCgAUg -3' miRNA: 3'- uCUGGAACgGUGGUAGACa-----GUGGgUG- -5' |
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21893 | 5' | -55.1 | NC_004902.1 | + | 33431 | 1.09 | 0.000637 |
Target: 5'- cAGACCUUGCCACCAUCUGUCACCCACu -3' miRNA: 3'- -UCUGGAACGGUGGUAGACAGUGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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