miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21897 5' -61.1 NC_004902.1 + 36630 0.66 0.341453
Target:  5'- gGCCUUCGCGcuGCCG-CGGGagcCGGUGCu -3'
miRNA:   3'- aCGGAGGUGU--CGGUaGUCC---GCCGCGu -5'
21897 5' -61.1 NC_004902.1 + 42694 0.66 0.33335
Target:  5'- cUGCUgUUACuAGCUGUCAGGCuGGCGUu -3'
miRNA:   3'- -ACGGaGGUG-UCGGUAGUCCG-CCGCGu -5'
21897 5' -61.1 NC_004902.1 + 24345 0.66 0.316796
Target:  5'- gUGCCgCCAaGGCCGacagcgcUCAGcGCGGCGgGg -3'
miRNA:   3'- -ACGGaGGUgUCGGU-------AGUC-CGCCGCgU- -5'
21897 5' -61.1 NC_004902.1 + 36556 0.67 0.294965
Target:  5'- gUGCCgCCAgCAGCCGguUCAGacugugccGUGGCGCc -3'
miRNA:   3'- -ACGGaGGU-GUCGGU--AGUC--------CGCCGCGu -5'
21897 5' -61.1 NC_004902.1 + 11124 0.67 0.280603
Target:  5'- gGUUUCUGCugcGCCuuugUAGGCGGCGUAg -3'
miRNA:   3'- aCGGAGGUGu--CGGua--GUCCGCCGCGU- -5'
21897 5' -61.1 NC_004902.1 + 7076 0.67 0.273633
Target:  5'- gGCgCUCCccacucaucGguGCCAUCcuGGCGGCGUu -3'
miRNA:   3'- aCG-GAGG---------UguCGGUAGu-CCGCCGCGu -5'
21897 5' -61.1 NC_004902.1 + 40114 0.7 0.161329
Target:  5'- uUGCCUgCgACAGCCAgguuacgUCGGGUagccugaaagGGCGCAu -3'
miRNA:   3'- -ACGGA-GgUGUCGGU-------AGUCCG----------CCGCGU- -5'
21897 5' -61.1 NC_004902.1 + 36417 0.72 0.119497
Target:  5'- cUGCCUUaCACAGCCuAUCgacucaGGGUGGCGUg -3'
miRNA:   3'- -ACGGAG-GUGUCGG-UAG------UCCGCCGCGu -5'
21897 5' -61.1 NC_004902.1 + 12290 0.74 0.090215
Target:  5'- aGCgCUCCGCGGCCcuaCAGGCgcagGGUGCAg -3'
miRNA:   3'- aCG-GAGGUGUCGGua-GUCCG----CCGCGU- -5'
21897 5' -61.1 NC_004902.1 + 21290 0.74 0.085239
Target:  5'- gGCCgcagaCGCGGCacuaCAGGCGGCGCAg -3'
miRNA:   3'- aCGGag---GUGUCGgua-GUCCGCCGCGU- -5'
21897 5' -61.1 NC_004902.1 + 37010 0.77 0.055455
Target:  5'- gGCCcgaUCCACAGCaCGcgCuGGCGGCGCAg -3'
miRNA:   3'- aCGG---AGGUGUCG-GUa-GuCCGCCGCGU- -5'
21897 5' -61.1 NC_004902.1 + 35675 1.08 0.00019
Target:  5'- uUGCCUCCACAGCCAUCAGGCGGCGCAg -3'
miRNA:   3'- -ACGGAGGUGUCGGUAGUCCGCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.