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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21898 | 3' | -59.7 | NC_004902.1 | + | 18502 | 0.68 | 0.319276 |
Target: 5'- -aGGCaCAgcuggaUGGGCAUACaGCCGguGAAa -3' miRNA: 3'- ggCCGgGU------ACCCGUAUG-CGGCguCUU- -5' |
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21898 | 3' | -59.7 | NC_004902.1 | + | 35536 | 0.71 | 0.196148 |
Target: 5'- gCUGGCCUAUuGGCAagcACGCuCGCAGAc -3' miRNA: 3'- -GGCCGGGUAcCCGUa--UGCG-GCGUCUu -5' |
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21898 | 3' | -59.7 | NC_004902.1 | + | 36508 | 1.07 | 0.00035 |
Target: 5'- gCCGGCCCAUGGGCAUACGCCGCAGAAc -3' miRNA: 3'- -GGCCGGGUACCCGUAUGCGGCGUCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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