miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21898 5' -57.8 NC_004902.1 + 36724 0.66 0.481667
Target:  5'- ---cGCAccGGGcGCGGUaGCUGUCAGCAc -3'
miRNA:   3'- acaaCGU--UCC-CGUCA-CGGCGGUCGUc -5'
21898 5' -57.8 NC_004902.1 + 16050 0.66 0.471333
Target:  5'- cUGUUGCAuGGGCAgGUGCaaaucaGCCuGUu- -3'
miRNA:   3'- -ACAACGUuCCCGU-CACGg-----CGGuCGuc -5'
21898 5' -57.8 NC_004902.1 + 26093 0.66 0.461113
Target:  5'- ---aGCAGGGGCc-UGCauuuGUCAGCAGg -3'
miRNA:   3'- acaaCGUUCCCGucACGg---CGGUCGUC- -5'
21898 5' -57.8 NC_004902.1 + 6937 0.67 0.421458
Target:  5'- -uUUGCAGGGGUgcGGUGauGCCaaucucAGCAGg -3'
miRNA:   3'- acAACGUUCCCG--UCACggCGG------UCGUC- -5'
21898 5' -57.8 NC_004902.1 + 13102 0.67 0.383929
Target:  5'- --aUGCAGccGGCGGUGUCGUUGGCGGu -3'
miRNA:   3'- acaACGUUc-CCGUCACGGCGGUCGUC- -5'
21898 5' -57.8 NC_004902.1 + 39378 0.67 0.374899
Target:  5'- cUGgcgUGCAGGGGguGUGCUGgCAcaaaCAGa -3'
miRNA:   3'- -ACa--ACGUUCCCguCACGGCgGUc---GUC- -5'
21898 5' -57.8 NC_004902.1 + 24332 0.68 0.357275
Target:  5'- ---aGCAAGGcGCAgcGUGCCGCCaaGGCc- -3'
miRNA:   3'- acaaCGUUCC-CGU--CACGGCGG--UCGuc -5'
21898 5' -57.8 NC_004902.1 + 39630 0.68 0.337737
Target:  5'- uUGUcacgGCAAGGGCcugccaaggcagggAGUGuuGCUGGCAc -3'
miRNA:   3'- -ACAa---CGUUCCCG--------------UCACggCGGUCGUc -5'
21898 5' -57.8 NC_004902.1 + 33451 0.68 0.335247
Target:  5'- cUGUUGCA-GGGCAugGCCcaggaguggcagauuGCCAGCAu -3'
miRNA:   3'- -ACAACGUuCCCGUcaCGG---------------CGGUCGUc -5'
21898 5' -57.8 NC_004902.1 + 40462 0.69 0.315809
Target:  5'- ---aGCAAGGGCAGUGUauCGCaAGCu- -3'
miRNA:   3'- acaaCGUUCCCGUCACG--GCGgUCGuc -5'
21898 5' -57.8 NC_004902.1 + 22748 0.71 0.237649
Target:  5'- aGcgGCGGGGGUGGUGgCGaUCAGCAGc -3'
miRNA:   3'- aCaaCGUUCCCGUCACgGC-GGUCGUC- -5'
21898 5' -57.8 NC_004902.1 + 33133 0.74 0.14505
Target:  5'- aUGUUGCaAAGGGCgAGgagauaCGCCAGCAGc -3'
miRNA:   3'- -ACAACG-UUCCCG-UCacg---GCGGUCGUC- -5'
21898 5' -57.8 NC_004902.1 + 36542 1.07 0.000409
Target:  5'- cUGUUGCAAGGGCAGUGCCGCCAGCAGc -3'
miRNA:   3'- -ACAACGUUCCCGUCACGGCGGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.