Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21899 | 5' | -58.3 | NC_004902.1 | + | 12392 | 0.69 | 0.291707 |
Target: 5'- uUCCUuggugaucugUGCCAcacgugcUGCACCCuGCGCCUGu- -3' miRNA: 3'- cAGGA----------ACGGU-------ACGUGGG-CGUGGACcu -5' |
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21899 | 5' | -58.3 | NC_004902.1 | + | 23325 | 0.68 | 0.347735 |
Target: 5'- uUCCUaGCCAuUGUaACCUGCACCgccaGGAc -3' miRNA: 3'- cAGGAaCGGU-ACG-UGGGCGUGGa---CCU- -5' |
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21899 | 5' | -58.3 | NC_004902.1 | + | 26456 | 0.72 | 0.19748 |
Target: 5'- cUCCUUcaGCCAgcguggcGCAUCCGCAUCUGGc -3' miRNA: 3'- cAGGAA--CGGUa------CGUGGGCGUGGACCu -5' |
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21899 | 5' | -58.3 | NC_004902.1 | + | 30665 | 0.67 | 0.410103 |
Target: 5'- gGUCCUUGCCugcUGCGCCCuugucaACCaGGc -3' miRNA: 3'- -CAGGAACGGu--ACGUGGGcg----UGGaCCu -5' |
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21899 | 5' | -58.3 | NC_004902.1 | + | 30752 | 0.66 | 0.429158 |
Target: 5'- aUUCUUGCUacGUGUGCCCuCACCUGa- -3' miRNA: 3'- cAGGAACGG--UACGUGGGcGUGGACcu -5' |
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21899 | 5' | -58.3 | NC_004902.1 | + | 34297 | 0.66 | 0.458691 |
Target: 5'- cUCCUUGCuCGUGCAUgucaaGCAUCUGaGAg -3' miRNA: 3'- cAGGAACG-GUACGUGgg---CGUGGAC-CU- -5' |
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21899 | 5' | -58.3 | NC_004902.1 | + | 39497 | 1.09 | 0.000335 |
Target: 5'- aGUCCUUGCCAUGCACCCGCACCUGGAg -3' miRNA: 3'- -CAGGAACGGUACGUGGGCGUGGACCU- -5' |
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21899 | 5' | -58.3 | NC_004902.1 | + | 43348 | 0.7 | 0.244267 |
Target: 5'- --gUUUGCCAUGCACCUuCACCUGu- -3' miRNA: 3'- cagGAACGGUACGUGGGcGUGGACcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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