miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
219 5' -57.3 AC_000008.1 + 15173 0.66 0.477149
Target:  5'- -gCCAcacGGGCugagGAGaaGCGCGCUGAGGc -3'
miRNA:   3'- gaGGUu--CCCG----UUCgaCGCGCGGUUCC- -5'
219 5' -57.3 AC_000008.1 + 6646 0.66 0.466802
Target:  5'- --gCGGGcGGCAAGC-GCGCGCUcguauGGGu -3'
miRNA:   3'- gagGUUC-CCGUUCGaCGCGCGGu----UCC- -5'
219 5' -57.3 AC_000008.1 + 11381 0.66 0.456574
Target:  5'- uUCCAcgcAGGGCGcgAGCUGCG-GCau-GGc -3'
miRNA:   3'- gAGGU---UCCCGU--UCGACGCgCGguuCC- -5'
219 5' -57.3 AC_000008.1 + 11415 0.66 0.456574
Target:  5'- aUCgCGAGcGGUu-GCUGCGCGagGAGGa -3'
miRNA:   3'- gAG-GUUC-CCGuuCGACGCGCggUUCC- -5'
219 5' -57.3 AC_000008.1 + 4318 0.66 0.446467
Target:  5'- uUUCAGuaGCAAGCUGauUGCCAGGGg -3'
miRNA:   3'- gAGGUUccCGUUCGACgcGCGGUUCC- -5'
219 5' -57.3 AC_000008.1 + 27297 0.66 0.446467
Target:  5'- cCUCCGGGGGCucGCc-CGCGUCAc-- -3'
miRNA:   3'- -GAGGUUCCCGuuCGacGCGCGGUucc -5'
219 5' -57.3 AC_000008.1 + 10777 0.66 0.436486
Target:  5'- uUCCAGGcGCGgcGGCUGCuGCGCUAGc- -3'
miRNA:   3'- gAGGUUCcCGU--UCGACG-CGCGGUUcc -5'
219 5' -57.3 AC_000008.1 + 18354 0.67 0.416916
Target:  5'- uCUCCAgaGGGGCGuggcgaaaAGCgucCGCGCCccgacAGGGa -3'
miRNA:   3'- -GAGGU--UCCCGU--------UCGac-GCGCGG-----UUCC- -5'
219 5' -57.3 AC_000008.1 + 23391 0.67 0.416916
Target:  5'- -gCguGGGGUuuGC-GCGCGCCGGGa -3'
miRNA:   3'- gaGguUCCCGuuCGaCGCGCGGUUCc -5'
219 5' -57.3 AC_000008.1 + 7914 0.67 0.379434
Target:  5'- uCUCCcuGGGCGGuaagccggacGCcGUGCGCCGGGc -3'
miRNA:   3'- -GAGGuuCCCGUU----------CGaCGCGCGGUUCc -5'
219 5' -57.3 AC_000008.1 + 8459 0.68 0.370422
Target:  5'- uUCCAGGGGCugguuGGUgGCGgCGUCGAuGGc -3'
miRNA:   3'- gAGGUUCCCGu----UCGaCGC-GCGGUU-CC- -5'
219 5' -57.3 AC_000008.1 + 8656 0.68 0.344277
Target:  5'- -gCCGcgcgcGGGCAGgagcugguGCUGCGCGCguAGGu -3'
miRNA:   3'- gaGGUu----CCCGUU--------CGACGCGCGguUCC- -5'
219 5' -57.3 AC_000008.1 + 12440 0.68 0.335861
Target:  5'- ---gAAGGGCAuggaGGCUGCGCGCgCGcugauGGa -3'
miRNA:   3'- gaggUUCCCGU----UCGACGCGCG-GUu----CC- -5'
219 5' -57.3 AC_000008.1 + 5340 0.68 0.335028
Target:  5'- ---aAGGGGUgcgcuccGGGCUGCGCgcugGCCAGGGu -3'
miRNA:   3'- gaggUUCCCG-------UUCGACGCG----CGGUUCC- -5'
219 5' -57.3 AC_000008.1 + 20229 0.69 0.303715
Target:  5'- --gUggGGGCuGGCggGCGCGCCAAa- -3'
miRNA:   3'- gagGuuCCCGuUCGa-CGCGCGGUUcc -5'
219 5' -57.3 AC_000008.1 + 25254 0.69 0.296056
Target:  5'- -cUCAAGGGCGAG--GCGCGCCGc-- -3'
miRNA:   3'- gaGGUUCCCGUUCgaCGCGCGGUucc -5'
219 5' -57.3 AC_000008.1 + 5576 0.7 0.246635
Target:  5'- uUCCGGGGaGUAGGCaucCGCGCCGcAGGc -3'
miRNA:   3'- gAGGUUCC-CGUUCGac-GCGCGGU-UCC- -5'
219 5' -57.3 AC_000008.1 + 10887 0.71 0.209893
Target:  5'- cCUCCAAGucGGCAGGCUcGCGCGUUugAAGc -3'
miRNA:   3'- -GAGGUUC--CCGUUCGA-CGCGCGG--UUCc -5'
219 5' -57.3 AC_000008.1 + 30393 1.11 0.000222
Target:  5'- cCUCCAAGGGCAAGCUGCGCGCCAAGGg -3'
miRNA:   3'- -GAGGUUCCCGUUCGACGCGCGGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.