miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21913 3' -55.2 NC_004913.1 + 20856 0.66 0.742132
Target:  5'- gCGCCCGGACaaccguuaUuucacggaugagaaaAGCGCCAugGGGAGuGa -3'
miRNA:   3'- -GUGGGUCUG--------G---------------UCGCGGUugUUCUCuC- -5'
21913 3' -55.2 NC_004913.1 + 38117 0.66 0.727334
Target:  5'- -cCCCAGGCCAGUGCUuuAGCGuuaacuuccGGAGc- -3'
miRNA:   3'- guGGGUCUGGUCGCGG--UUGU---------UCUCuc -5'
21913 3' -55.2 NC_004913.1 + 59253 0.67 0.640119
Target:  5'- uCAgCCAGGacguCCAGCGUCAGCAAuGAGc- -3'
miRNA:   3'- -GUgGGUCU----GGUCGCGGUUGUU-CUCuc -5'
21913 3' -55.2 NC_004913.1 + 8571 0.68 0.606996
Target:  5'- aGgCCAGGCUGGCGCaggagAGCGccGGAGAGa -3'
miRNA:   3'- gUgGGUCUGGUCGCGg----UUGU--UCUCUC- -5'
21913 3' -55.2 NC_004913.1 + 45950 0.68 0.595986
Target:  5'- cCAUCUuaGGGCgAGCGCCAaugACAaacAGAGAGc -3'
miRNA:   3'- -GUGGG--UCUGgUCGCGGU---UGU---UCUCUC- -5'
21913 3' -55.2 NC_004913.1 + 21146 0.69 0.552341
Target:  5'- uGCCCGuGGCaacGCGCCGACGGcAGAGg -3'
miRNA:   3'- gUGGGU-CUGgu-CGCGGUUGUUcUCUC- -5'
21913 3' -55.2 NC_004913.1 + 22574 0.69 0.552341
Target:  5'- --aCCGGACCAGaaCGCCG-CAAGGGGa -3'
miRNA:   3'- gugGGUCUGGUC--GCGGUuGUUCUCUc -5'
21913 3' -55.2 NC_004913.1 + 16922 1.09 0.000992
Target:  5'- gCACCCAGACCAGCGCCAACAAGAGAGg -3'
miRNA:   3'- -GUGGGUCUGGUCGCGGUUGUUCUCUC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.