miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21914 5' -54.5 NC_004913.1 + 9491 0.66 0.797124
Target:  5'- uGCCGGUccccguucgccGGuuGCCCCgacaGgGCCGGUGUc -3'
miRNA:   3'- -CGGUUA-----------UCggCGGGGg---CaUGGUUACG- -5'
21914 5' -54.5 NC_004913.1 + 54414 0.66 0.797124
Target:  5'- cGCCAcUGGCUGaccauCCCUGUACUuucagGCu -3'
miRNA:   3'- -CGGUuAUCGGCg----GGGGCAUGGuua--CG- -5'
21914 5' -54.5 NC_004913.1 + 20230 0.66 0.787356
Target:  5'- cGUgAAUAGCCGCCCugcgCCGcAUUAAUcGCc -3'
miRNA:   3'- -CGgUUAUCGGCGGG----GGCaUGGUUA-CG- -5'
21914 5' -54.5 NC_004913.1 + 2187 0.66 0.767346
Target:  5'- gGCCAcacuuuauuGUGGaUCGCCCCUGUA---GUGCu -3'
miRNA:   3'- -CGGU---------UAUC-GGCGGGGGCAUgguUACG- -5'
21914 5' -54.5 NC_004913.1 + 57660 0.66 0.757127
Target:  5'- cGCCAc---CUGCUCCgGUACC-GUGCg -3'
miRNA:   3'- -CGGUuaucGGCGGGGgCAUGGuUACG- -5'
21914 5' -54.5 NC_004913.1 + 24648 0.66 0.74678
Target:  5'- cGCaaggGGCCGUauuacUCCCGUACCA--GCa -3'
miRNA:   3'- -CGguuaUCGGCG-----GGGGCAUGGUuaCG- -5'
21914 5' -54.5 NC_004913.1 + 15410 0.66 0.74678
Target:  5'- cGCCAG-AGCCGgaaCCUUCGUAagccacauCCAGUGUa -3'
miRNA:   3'- -CGGUUaUCGGC---GGGGGCAU--------GGUUACG- -5'
21914 5' -54.5 NC_004913.1 + 3328 0.68 0.649791
Target:  5'- uCCAcAUAacGCUGCCCCUGUGUCAggGCg -3'
miRNA:   3'- cGGU-UAU--CGGCGGGGGCAUGGUuaCG- -5'
21914 5' -54.5 NC_004913.1 + 17479 0.71 0.467877
Target:  5'- uGCCAccaguUGGCCGCCaacacucaguuUCUGUcuuGCCGGUGCa -3'
miRNA:   3'- -CGGUu----AUCGGCGG-----------GGGCA---UGGUUACG- -5'
21914 5' -54.5 NC_004913.1 + 21577 0.82 0.108283
Target:  5'- aGCCGGUAGCC-CUUCaCGUACCGGUGCu -3'
miRNA:   3'- -CGGUUAUCGGcGGGG-GCAUGGUUACG- -5'
21914 5' -54.5 NC_004913.1 + 17675 1.13 0.000667
Target:  5'- cGCCAAUAGCCGCCCCCGUACCAAUGCc -3'
miRNA:   3'- -CGGUUAUCGGCGGGGGCAUGGUUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.