Results 1 - 11 of 11 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21914 | 5' | -54.5 | NC_004913.1 | + | 9491 | 0.66 | 0.797124 |
Target: 5'- uGCCGGUccccguucgccGGuuGCCCCgacaGgGCCGGUGUc -3' miRNA: 3'- -CGGUUA-----------UCggCGGGGg---CaUGGUUACG- -5' |
|||||||
21914 | 5' | -54.5 | NC_004913.1 | + | 54414 | 0.66 | 0.797124 |
Target: 5'- cGCCAcUGGCUGaccauCCCUGUACUuucagGCu -3' miRNA: 3'- -CGGUuAUCGGCg----GGGGCAUGGuua--CG- -5' |
|||||||
21914 | 5' | -54.5 | NC_004913.1 | + | 20230 | 0.66 | 0.787356 |
Target: 5'- cGUgAAUAGCCGCCCugcgCCGcAUUAAUcGCc -3' miRNA: 3'- -CGgUUAUCGGCGGG----GGCaUGGUUA-CG- -5' |
|||||||
21914 | 5' | -54.5 | NC_004913.1 | + | 2187 | 0.66 | 0.767346 |
Target: 5'- gGCCAcacuuuauuGUGGaUCGCCCCUGUA---GUGCu -3' miRNA: 3'- -CGGU---------UAUC-GGCGGGGGCAUgguUACG- -5' |
|||||||
21914 | 5' | -54.5 | NC_004913.1 | + | 57660 | 0.66 | 0.757127 |
Target: 5'- cGCCAc---CUGCUCCgGUACC-GUGCg -3' miRNA: 3'- -CGGUuaucGGCGGGGgCAUGGuUACG- -5' |
|||||||
21914 | 5' | -54.5 | NC_004913.1 | + | 15410 | 0.66 | 0.74678 |
Target: 5'- cGCCAG-AGCCGgaaCCUUCGUAagccacauCCAGUGUa -3' miRNA: 3'- -CGGUUaUCGGC---GGGGGCAU--------GGUUACG- -5' |
|||||||
21914 | 5' | -54.5 | NC_004913.1 | + | 24648 | 0.66 | 0.74678 |
Target: 5'- cGCaaggGGCCGUauuacUCCCGUACCA--GCa -3' miRNA: 3'- -CGguuaUCGGCG-----GGGGCAUGGUuaCG- -5' |
|||||||
21914 | 5' | -54.5 | NC_004913.1 | + | 3328 | 0.68 | 0.649791 |
Target: 5'- uCCAcAUAacGCUGCCCCUGUGUCAggGCg -3' miRNA: 3'- cGGU-UAU--CGGCGGGGGCAUGGUuaCG- -5' |
|||||||
21914 | 5' | -54.5 | NC_004913.1 | + | 17479 | 0.71 | 0.467877 |
Target: 5'- uGCCAccaguUGGCCGCCaacacucaguuUCUGUcuuGCCGGUGCa -3' miRNA: 3'- -CGGUu----AUCGGCGG-----------GGGCA---UGGUUACG- -5' |
|||||||
21914 | 5' | -54.5 | NC_004913.1 | + | 21577 | 0.82 | 0.108283 |
Target: 5'- aGCCGGUAGCC-CUUCaCGUACCGGUGCu -3' miRNA: 3'- -CGGUUAUCGGcGGGG-GCAUGGUUACG- -5' |
|||||||
21914 | 5' | -54.5 | NC_004913.1 | + | 17675 | 1.13 | 0.000667 |
Target: 5'- cGCCAAUAGCCGCCCCCGUACCAAUGCc -3' miRNA: 3'- -CGGUUAUCGGCGGGGGCAUGGUUACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home