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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21917 | 5' | -52.8 | NC_004913.1 | + | 20194 | 0.66 | 0.852047 |
Target: 5'- cGUGAGACCGcCGGAAUgGgUGuGUCACc -3' miRNA: 3'- -CACUUUGGU-GCCUUAgC-GCcCAGUGc -5' |
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21917 | 5' | -52.8 | NC_004913.1 | + | 55471 | 0.68 | 0.777429 |
Target: 5'- -cGGAGCCGgaaGGcAUCGCGGGUgAgGg -3' miRNA: 3'- caCUUUGGUg--CCuUAGCGCCCAgUgC- -5' |
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21917 | 5' | -52.8 | NC_004913.1 | + | 21175 | 1.09 | 0.002346 |
Target: 5'- cGUGAAACCACGGAAUCGCGGGUCACGc -3' miRNA: 3'- -CACUUUGGUGCCUUAGCGCCCAGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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