Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 21921 | 5' | -57.4 | NC_004913.1 | + | 8807 | 0.66 | 0.55721 |
|
Target: 5'- gGGCCUGCUggUCCGC-GUGGUgagAAGgGCg -3' miRNA: 3'- aUUGGACGA--GGGUGuCGCCG---UUCgCG- -5' |
|||||||
| 21921 | 5' | -57.4 | NC_004913.1 | + | 47 | 0.66 | 0.546471 |
|
Target: 5'- -cGCCUGCauaUCUCAgAGCacGGCAAaauuuGCGCg -3' miRNA: 3'- auUGGACG---AGGGUgUCG--CCGUU-----CGCG- -5' |
|||||||
| 21921 | 5' | -57.4 | NC_004913.1 | + | 39100 | 0.69 | 0.387604 |
|
Target: 5'- cAGCCaGCuUCCCugcCAGCGuuGCGAGUGCu -3' miRNA: 3'- aUUGGaCG-AGGGu--GUCGC--CGUUCGCG- -5' |
|||||||
| 21921 | 5' | -57.4 | NC_004913.1 | + | 7018 | 0.69 | 0.378705 |
|
Target: 5'- -uGCCUGUUCUCcCGGUgaGGUGAGCGUg -3' miRNA: 3'- auUGGACGAGGGuGUCG--CCGUUCGCG- -5' |
|||||||
| 21921 | 5' | -57.4 | NC_004913.1 | + | 11587 | 0.71 | 0.296746 |
|
Target: 5'- aGGCCUGUcauauucUCUgGCGGCGGCAGGUa- -3' miRNA: 3'- aUUGGACG-------AGGgUGUCGCCGUUCGcg -5' |
|||||||
| 21921 | 5' | -57.4 | NC_004913.1 | + | 16845 | 0.73 | 0.224494 |
|
Target: 5'- uUGGCgCUGgUCUgGguGCGGCAGGUGCa -3' miRNA: 3'- -AUUG-GACgAGGgUguCGCCGUUCGCG- -5' |
|||||||
| 21921 | 5' | -57.4 | NC_004913.1 | + | 26456 | 1.1 | 0.000414 |
|
Target: 5'- aUAACCUGCUCCCACAGCGGCAAGCGCg -3' miRNA: 3'- -AUUGGACGAGGGUGUCGCCGUUCGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home