miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21929 5' -60.6 NC_004913.1 + 5676 0.66 0.424554
Target:  5'- cAUUUGCCagcGCCUGaGCCCCCaguaacauGGCGCg -3'
miRNA:   3'- -UAAACGG---CGGGUaCGGGGGg-------UCGUGa -5'
21929 5' -60.6 NC_004913.1 + 24177 0.66 0.415261
Target:  5'- ---cGCuCGCCCucaCCUUCCGGCACUu -3'
miRNA:   3'- uaaaCG-GCGGGuacGGGGGGUCGUGA- -5'
21929 5' -60.6 NC_004913.1 + 17727 0.66 0.406094
Target:  5'- --aUGCCGCCaauuacUGCUCCagcaaCAGCACc -3'
miRNA:   3'- uaaACGGCGGgu----ACGGGGg----GUCGUGa -5'
21929 5' -60.6 NC_004913.1 + 12835 0.66 0.405184
Target:  5'- ---cGCCGUaaaCC-UGCCCCggcgucguggcaaCCAGCACUg -3'
miRNA:   3'- uaaaCGGCG---GGuACGGGG-------------GGUCGUGA- -5'
21929 5' -60.6 NC_004913.1 + 10808 0.66 0.397055
Target:  5'- --aUGCCGCgcguugugacauCCAUGCUgCCCgAGCAUUc -3'
miRNA:   3'- uaaACGGCG------------GGUACGGgGGG-UCGUGA- -5'
21929 5' -60.6 NC_004913.1 + 54530 0.67 0.321755
Target:  5'- ---aGCCGCaCCGuUGCCCgcggcguacUCCAGCACc -3'
miRNA:   3'- uaaaCGGCG-GGU-ACGGG---------GGGUCGUGa -5'
21929 5' -60.6 NC_004913.1 + 8744 0.68 0.314078
Target:  5'- ---gGCC-CCCGggGCCCCCguGCAUUc -3'
miRNA:   3'- uaaaCGGcGGGUa-CGGGGGguCGUGA- -5'
21929 5' -60.6 NC_004913.1 + 7198 0.68 0.306541
Target:  5'- ----aCCGCUCAagUGCCCCCgCAGcCACUu -3'
miRNA:   3'- uaaacGGCGGGU--ACGGGGG-GUC-GUGA- -5'
21929 5' -60.6 NC_004913.1 + 52875 0.7 0.232689
Target:  5'- -cUUGCCGCCagcGUCUCCCuGCGCg -3'
miRNA:   3'- uaAACGGCGGguaCGGGGGGuCGUGa -5'
21929 5' -60.6 NC_004913.1 + 19900 0.72 0.152468
Target:  5'- --cUGCCGCCauugcacucUGCCCCUguGCACUu -3'
miRNA:   3'- uaaACGGCGGgu-------ACGGGGGguCGUGA- -5'
21929 5' -60.6 NC_004913.1 + 47849 0.74 0.115973
Target:  5'- --aUGgUGCCCAUGCCCCCCuGGCu-- -3'
miRNA:   3'- uaaACgGCGGGUACGGGGGG-UCGuga -5'
21929 5' -60.6 NC_004913.1 + 50642 0.75 0.095458
Target:  5'- --gUGCCaGCgCCAUGaacgucCCCCCCAGCACg -3'
miRNA:   3'- uaaACGG-CG-GGUAC------GGGGGGUCGUGa -5'
21929 5' -60.6 NC_004913.1 + 50438 1.04 0.000534
Target:  5'- uAUUUGCCGCCCAUGCCCCCCAGCACUc -3'
miRNA:   3'- -UAAACGGCGGGUACGGGGGGUCGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.