Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21929 | 5' | -60.6 | NC_004913.1 | + | 50438 | 1.04 | 0.000534 |
Target: 5'- uAUUUGCCGCCCAUGCCCCCCAGCACUc -3' miRNA: 3'- -UAAACGGCGGGUACGGGGGGUCGUGA- -5' |
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21929 | 5' | -60.6 | NC_004913.1 | + | 50642 | 0.75 | 0.095458 |
Target: 5'- --gUGCCaGCgCCAUGaacgucCCCCCCAGCACg -3' miRNA: 3'- uaaACGG-CG-GGUAC------GGGGGGUCGUGa -5' |
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21929 | 5' | -60.6 | NC_004913.1 | + | 47849 | 0.74 | 0.115973 |
Target: 5'- --aUGgUGCCCAUGCCCCCCuGGCu-- -3' miRNA: 3'- uaaACgGCGGGUACGGGGGG-UCGuga -5' |
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21929 | 5' | -60.6 | NC_004913.1 | + | 19900 | 0.72 | 0.152468 |
Target: 5'- --cUGCCGCCauugcacucUGCCCCUguGCACUu -3' miRNA: 3'- uaaACGGCGGgu-------ACGGGGGguCGUGA- -5' |
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21929 | 5' | -60.6 | NC_004913.1 | + | 52875 | 0.7 | 0.232689 |
Target: 5'- -cUUGCCGCCagcGUCUCCCuGCGCg -3' miRNA: 3'- uaAACGGCGGguaCGGGGGGuCGUGa -5' |
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21929 | 5' | -60.6 | NC_004913.1 | + | 7198 | 0.68 | 0.306541 |
Target: 5'- ----aCCGCUCAagUGCCCCCgCAGcCACUu -3' miRNA: 3'- uaaacGGCGGGU--ACGGGGG-GUC-GUGA- -5' |
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21929 | 5' | -60.6 | NC_004913.1 | + | 8744 | 0.68 | 0.314078 |
Target: 5'- ---gGCC-CCCGggGCCCCCguGCAUUc -3' miRNA: 3'- uaaaCGGcGGGUa-CGGGGGguCGUGA- -5' |
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21929 | 5' | -60.6 | NC_004913.1 | + | 54530 | 0.67 | 0.321755 |
Target: 5'- ---aGCCGCaCCGuUGCCCgcggcguacUCCAGCACc -3' miRNA: 3'- uaaaCGGCG-GGU-ACGGG---------GGGUCGUGa -5' |
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21929 | 5' | -60.6 | NC_004913.1 | + | 12835 | 0.66 | 0.405184 |
Target: 5'- ---cGCCGUaaaCC-UGCCCCggcgucguggcaaCCAGCACUg -3' miRNA: 3'- uaaaCGGCG---GGuACGGGG-------------GGUCGUGA- -5' |
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21929 | 5' | -60.6 | NC_004913.1 | + | 17727 | 0.66 | 0.406094 |
Target: 5'- --aUGCCGCCaauuacUGCUCCagcaaCAGCACc -3' miRNA: 3'- uaaACGGCGGgu----ACGGGGg----GUCGUGa -5' |
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21929 | 5' | -60.6 | NC_004913.1 | + | 24177 | 0.66 | 0.415261 |
Target: 5'- ---cGCuCGCCCucaCCUUCCGGCACUu -3' miRNA: 3'- uaaaCG-GCGGGuacGGGGGGUCGUGA- -5' |
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21929 | 5' | -60.6 | NC_004913.1 | + | 5676 | 0.66 | 0.424554 |
Target: 5'- cAUUUGCCagcGCCUGaGCCCCCaguaacauGGCGCg -3' miRNA: 3'- -UAAACGG---CGGGUaCGGGGGg-------UCGUGa -5' |
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21929 | 5' | -60.6 | NC_004913.1 | + | 10808 | 0.66 | 0.397055 |
Target: 5'- --aUGCCGCgcguugugacauCCAUGCUgCCCgAGCAUUc -3' miRNA: 3'- uaaACGGCG------------GGUACGGgGGG-UCGUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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