miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21930 3' -57.3 NC_004913.1 + 52678 0.66 0.594101
Target:  5'- ---gGGUUUGGUGgCACCAGGCCg-- -3'
miRNA:   3'- caagCCGGACCACgGUGGUUUGGgcg -5'
21930 3' -57.3 NC_004913.1 + 3793 0.67 0.583337
Target:  5'- --cCGGCgUcGGUGCCACauuguuaucGCCCGUc -3'
miRNA:   3'- caaGCCGgA-CCACGGUGguu------UGGGCG- -5'
21930 3' -57.3 NC_004913.1 + 42923 0.67 0.54075
Target:  5'- --gCGGUCaGGUGUUucuacaACCAuaAACCCGCa -3'
miRNA:   3'- caaGCCGGaCCACGG------UGGU--UUGGGCG- -5'
21930 3' -57.3 NC_004913.1 + 11822 0.68 0.518804
Target:  5'- --aUGGCCUGGUGUCugUugaugcaaacgguAAugUCGCg -3'
miRNA:   3'- caaGCCGGACCACGGugG-------------UUugGGCG- -5'
21930 3' -57.3 NC_004913.1 + 9527 0.68 0.469087
Target:  5'- uUUCGGCCccugcGG-GCCuGCCGGACCaGCa -3'
miRNA:   3'- cAAGCCGGa----CCaCGG-UGGUUUGGgCG- -5'
21930 3' -57.3 NC_004913.1 + 9427 0.69 0.459239
Target:  5'- --cCGGCaggugaugCUGGU-CCGgCAGGCCCGCa -3'
miRNA:   3'- caaGCCG--------GACCAcGGUgGUUUGGGCG- -5'
21930 3' -57.3 NC_004913.1 + 25221 0.69 0.449502
Target:  5'- --aCGGUgUGGUGUCACUgc-CCCGUa -3'
miRNA:   3'- caaGCCGgACCACGGUGGuuuGGGCG- -5'
21930 3' -57.3 NC_004913.1 + 9689 0.69 0.449502
Target:  5'- cUUCGGCCccugagguccGGUcGCCcccACCGGGCCUGCc -3'
miRNA:   3'- cAAGCCGGa---------CCA-CGG---UGGUUUGGGCG- -5'
21930 3' -57.3 NC_004913.1 + 12884 0.69 0.420061
Target:  5'- -aUCGGCgUGaagGCCaucauugACCAGAUCCGCg -3'
miRNA:   3'- caAGCCGgACca-CGG-------UGGUUUGGGCG- -5'
21930 3' -57.3 NC_004913.1 + 58984 0.71 0.35893
Target:  5'- uGUUCGaugaaCUGGUGuUCAcCCGGGCCCGCg -3'
miRNA:   3'- -CAAGCcg---GACCAC-GGU-GGUUUGGGCG- -5'
21930 3' -57.3 NC_004913.1 + 9635 0.71 0.334362
Target:  5'- uUUCGGUCccugUGG-GCCuGCCGGGCCUGCc -3'
miRNA:   3'- cAAGCCGG----ACCaCGG-UGGUUUGGGCG- -5'
21930 3' -57.3 NC_004913.1 + 52761 1.12 0.000413
Target:  5'- aGUUCGGCCUGGUGCCACCAAACCCGCg -3'
miRNA:   3'- -CAAGCCGGACCACGGUGGUUUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.