Results 1 - 13 of 13 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21935 | 3' | -59.4 | NC_004913.1 | + | 28313 | 0.76 | 0.115794 |
Target: 5'- uGGCGcuuuuGCaCAGCAGGGCGGUuuccaagggccUGAAGCa -3' miRNA: 3'- gCCGU-----UG-GUCGUCCCGCCG-----------ACUUCGg -5' |
|||||||
21935 | 3' | -59.4 | NC_004913.1 | + | 6919 | 0.73 | 0.182907 |
Target: 5'- aCGGCAcACCAaCGacuGGCGGCUGAAuGCCa -3' miRNA: 3'- -GCCGU-UGGUcGUc--CCGCCGACUU-CGG- -5' |
|||||||
21935 | 3' | -59.4 | NC_004913.1 | + | 21483 | 0.68 | 0.375269 |
Target: 5'- uGGCGACCAGCGGcGuuuucCGGUgccGGAGCUu -3' miRNA: 3'- gCCGUUGGUCGUC-Cc----GCCGa--CUUCGG- -5' |
|||||||
21935 | 3' | -59.4 | NC_004913.1 | + | 39850 | 0.66 | 0.477053 |
Target: 5'- -uGCAauauGCCAuuGCAGGGUGGcCUGuuGCUg -3' miRNA: 3'- gcCGU----UGGU--CGUCCCGCC-GACuuCGG- -5' |
|||||||
21935 | 3' | -59.4 | NC_004913.1 | + | 19449 | 0.67 | 0.457496 |
Target: 5'- aGGCAACCGGUAaGGCuGUcagUGAugguGCCa -3' miRNA: 3'- gCCGUUGGUCGUcCCGcCG---ACUu---CGG- -5' |
|||||||
21935 | 3' | -59.4 | NC_004913.1 | + | 26150 | 0.67 | 0.44788 |
Target: 5'- cCGGUuugucacGCCAGCA-GGCGGCgucucuuGCCa -3' miRNA: 3'- -GCCGu------UGGUCGUcCCGCCGacuu---CGG- -5' |
|||||||
21935 | 3' | -59.4 | NC_004913.1 | + | 15069 | 0.67 | 0.44788 |
Target: 5'- cCGGCAgcuucuGCCAGaacggauauCAGGGCGaauuaCUGGAGUCu -3' miRNA: 3'- -GCCGU------UGGUC---------GUCCCGCc----GACUUCGG- -5' |
|||||||
21935 | 3' | -59.4 | NC_004913.1 | + | 54340 | 0.67 | 0.419723 |
Target: 5'- uGGuCAGCCAGUGGcGGCagGGCaGAAGUg -3' miRNA: 3'- gCC-GUUGGUCGUC-CCG--CCGaCUUCGg -5' |
|||||||
21935 | 3' | -59.4 | NC_004913.1 | + | 20138 | 0.68 | 0.409671 |
Target: 5'- gGGCGAUUAaugcggcGCAGGGCGGCUauucacGCUa -3' miRNA: 3'- gCCGUUGGU-------CGUCCCGCCGAcuu---CGG- -5' |
|||||||
21935 | 3' | -59.4 | NC_004913.1 | + | 9420 | 0.73 | 0.187283 |
Target: 5'- aCGGgGACCGGCAGGuGauGCUGGuccggcaGGCCc -3' miRNA: 3'- -GCCgUUGGUCGUCC-CgcCGACU-------UCGG- -5' |
|||||||
21935 | 3' | -59.4 | NC_004913.1 | + | 9340 | 0.75 | 0.143916 |
Target: 5'- aCGG-GGCCAGCAGGucCGGCUG-GGCCg -3' miRNA: 3'- -GCCgUUGGUCGUCCc-GCCGACuUCGG- -5' |
|||||||
21935 | 3' | -59.4 | NC_004913.1 | + | 19362 | 0.77 | 0.103736 |
Target: 5'- cCGGUGG-CAGCAGGGgGGCUGAugaGGUCa -3' miRNA: 3'- -GCCGUUgGUCGUCCCgCCGACU---UCGG- -5' |
|||||||
21935 | 3' | -59.4 | NC_004913.1 | + | 8402 | 1.12 | 0.000227 |
Target: 5'- aCGGCAACCAGCAGGGCGGCUGAAGCCg -3' miRNA: 3'- -GCCGUUGGUCGUCCCGCCGACUUCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home