Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 21935 | 5' | -56 | NC_004913.1 | + | 48776 | 0.66 | 0.699117 |
|
Target: 5'- -gGGCUGGgcgucaggaggGCUGCaUGAGGCgacaGCGACg -3' miRNA: 3'- cgCUGACUa----------CGGUG-ACUCCGa---CGCUG- -5' |
|||||||
| 21935 | 5' | -56 | NC_004913.1 | + | 17510 | 0.69 | 0.504248 |
|
Target: 5'- aCGACgUGAaGaaAUUGAGGCUGCGAa -3' miRNA: 3'- cGCUG-ACUaCggUGACUCCGACGCUg -5' |
|||||||
| 21935 | 5' | -56 | NC_004913.1 | + | 13374 | 0.7 | 0.45358 |
|
Target: 5'- cGCGgugauugaaacACUGGUGUCGCgGaAGGUUGUGGCg -3' miRNA: 3'- -CGC-----------UGACUACGGUGaC-UCCGACGCUG- -5' |
|||||||
| 21935 | 5' | -56 | NC_004913.1 | + | 48386 | 0.71 | 0.405807 |
|
Target: 5'- aGCGACaaaaacgcucUGuGUGCUcacuggcuaACUGAGGCUGaCGACg -3' miRNA: 3'- -CGCUG----------AC-UACGG---------UGACUCCGAC-GCUG- -5' |
|||||||
| 21935 | 5' | -56 | NC_004913.1 | + | 8118 | 0.72 | 0.320351 |
|
Target: 5'- cGC-ACUGGUGCCGCUGAGcGCauccgGUGAa -3' miRNA: 3'- -CGcUGACUACGGUGACUC-CGa----CGCUg -5' |
|||||||
| 21935 | 5' | -56 | NC_004913.1 | + | 8437 | 1.11 | 0.000648 |
|
Target: 5'- aGCGACUGAUGCCACUGAGGCUGCGACc -3' miRNA: 3'- -CGCUGACUACGGUGACUCCGACGCUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home