miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21937 3' -59.5 NC_004913.1 + 19563 0.67 0.435283
Target:  5'- aUGaUUCUGC-GGUCUGGGuGGCGAAg -3'
miRNA:   3'- gACcAGGACGuCCAGGCUCuCCGCUU- -5'
21937 3' -59.5 NC_004913.1 + 5080 0.67 0.432452
Target:  5'- aCUGGUCCUGCAGGUcauuaaaguacgucCCcAGAaGCGu- -3'
miRNA:   3'- -GACCAGGACGUCCA--------------GGcUCUcCGCuu -5'
21937 3' -59.5 NC_004913.1 + 11734 0.68 0.386917
Target:  5'- uCUGGUUCcaaaaucccuucaaUGCAGGcgugUCUGAGcAGGCGGAg -3'
miRNA:   3'- -GACCAGG--------------ACGUCC----AGGCUC-UCCGCUU- -5'
21937 3' -59.5 NC_004913.1 + 8953 0.68 0.380799
Target:  5'- -aGGUCCUGCAGGcCCGcaAGGUc-- -3'
miRNA:   3'- gaCCAGGACGUCCaGGCucUCCGcuu -5'
21937 3' -59.5 NC_004913.1 + 9585 0.68 0.380799
Target:  5'- -aGGUgCgGCAGGcCCGguGGGGGCGAc -3'
miRNA:   3'- gaCCAgGaCGUCCaGGC--UCUCCGCUu -5'
21937 3' -59.5 NC_004913.1 + 8806 0.68 0.355319
Target:  5'- -aGGgCCUGCuGGUCCGcGuGGUGAGa -3'
miRNA:   3'- gaCCaGGACGuCCAGGCuCuCCGCUU- -5'
21937 3' -59.5 NC_004913.1 + 9439 0.77 0.083917
Target:  5'- gCUGGUCCgGCAGGcCCGcAGGGGcCGAAa -3'
miRNA:   3'- -GACCAGGaCGUCCaGGC-UCUCC-GCUU- -5'
21937 3' -59.5 NC_004913.1 + 9058 1.05 0.000677
Target:  5'- cCUGGUCCUGCAGGUCCGAGAGGCGAAc -3'
miRNA:   3'- -GACCAGGACGUCCAGGCUCUCCGCUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.