Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21939 | 3' | -59.1 | NC_004913.1 | + | 56743 | 0.66 | 0.551274 |
Target: 5'- -gGGGAUGGgGCuGGCCUgGCAAUCAc -3' miRNA: 3'- cgUCCUGCUgCG-UCGGGgCGUUGGUc -5' |
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21939 | 3' | -59.1 | NC_004913.1 | + | 26687 | 0.66 | 0.551274 |
Target: 5'- aCGGGACGcCGuCAGgucaCCCGCcGCCAc -3' miRNA: 3'- cGUCCUGCuGC-GUCg---GGGCGuUGGUc -5' |
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21939 | 3' | -59.1 | NC_004913.1 | + | 29965 | 0.66 | 0.540873 |
Target: 5'- uGCuGGAUGaACGggaaagaaacCAGCaauacaucaaaCCCGCGACCAGg -3' miRNA: 3'- -CGuCCUGC-UGC----------GUCG-----------GGGCGUUGGUC- -5' |
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21939 | 3' | -59.1 | NC_004913.1 | + | 43274 | 0.66 | 0.510097 |
Target: 5'- --uGGAUGACG-AGaUCCgCGCAACCAGu -3' miRNA: 3'- cguCCUGCUGCgUC-GGG-GCGUUGGUC- -5' |
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21939 | 3' | -59.1 | NC_004913.1 | + | 11299 | 0.67 | 0.498995 |
Target: 5'- cCGGGAacugcgguacaacUGACGCuGGCUCCGguGCCAu -3' miRNA: 3'- cGUCCU-------------GCUGCG-UCGGGGCguUGGUc -5' |
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21939 | 3' | -59.1 | NC_004913.1 | + | 38975 | 0.71 | 0.264832 |
Target: 5'- cGguGGugGGCGUugauggcuGGUCCCGCAucaucaaugaaaACCAGc -3' miRNA: 3'- -CguCCugCUGCG--------UCGGGGCGU------------UGGUC- -5' |
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21939 | 3' | -59.1 | NC_004913.1 | + | 55450 | 0.73 | 0.190226 |
Target: 5'- uGCuGGGCGcACcgGCAGCUCCGgAGCCGGa -3' miRNA: 3'- -CGuCCUGC-UG--CGUCGGGGCgUUGGUC- -5' |
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21939 | 3' | -59.1 | NC_004913.1 | + | 20363 | 1.1 | 0.000367 |
Target: 5'- aGCAGGACGACGCAGCCCCGCAACCAGa -3' miRNA: 3'- -CGUCCUGCUGCGUCGGGGCGUUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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