miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2194 3' -55.6 NC_001396.1 + 256 0.66 0.183741
Target:  5'- -cCGAUGAaGUAaGCgCCGCCCACCAu -3'
miRNA:   3'- cuGCUGUUgCAUgUGgGGUGGGUGGU- -5'
2194 3' -55.6 NC_001396.1 + 1043 0.67 0.133582
Target:  5'- uGAUGccgcacCGugGUACACCCC-UCCGCCu -3'
miRNA:   3'- -CUGCu-----GUugCAUGUGGGGuGGGUGGu -5'
2194 3' -55.6 NC_001396.1 + 1662 0.71 0.064539
Target:  5'- aGCGGCAauuGCG-AUGCCCCACCUAUCu -3'
miRNA:   3'- cUGCUGU---UGCaUGUGGGGUGGGUGGu -5'
2194 3' -55.6 NC_001396.1 + 3111 0.69 0.100864
Target:  5'- cGCGACAccAUGUucgccaagaaagcagACGCUgCGCCCGCCAa -3'
miRNA:   3'- cUGCUGU--UGCA---------------UGUGGgGUGGGUGGU- -5'
2194 3' -55.6 NC_001396.1 + 3115 0.68 0.129325
Target:  5'- --aGACGGCGUaccACGCgCCGCCaGCCAg -3'
miRNA:   3'- cugCUGUUGCA---UGUGgGGUGGgUGGU- -5'
2194 3' -55.6 NC_001396.1 + 3557 0.69 0.09631
Target:  5'- gGACGACGAC--ACuGCCCCGCUCugCu -3'
miRNA:   3'- -CUGCUGUUGcaUG-UGGGGUGGGugGu -5'
2194 3' -55.6 NC_001396.1 + 3604 1.08 0.000055
Target:  5'- aGACGACAACGUACACCCCACCCACCAc -3'
miRNA:   3'- -CUGCUGUUGCAUGUGGGGUGGGUGGU- -5'
2194 3' -55.6 NC_001396.1 + 5110 0.66 0.178057
Target:  5'- uACGAUcGCGUAgACCUgACCgGCCc -3'
miRNA:   3'- cUGCUGuUGCAUgUGGGgUGGgUGGu -5'
2194 3' -55.6 NC_001396.1 + 6316 0.75 0.032731
Target:  5'- gGAUGGCAGCGUcgaacucacgcACGCUCgUACCCACCAc -3'
miRNA:   3'- -CUGCUGUUGCA-----------UGUGGG-GUGGGUGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.