miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21940 5' -55.9 NC_004913.1 + 51172 0.66 0.727982
Target:  5'- uACGuuuaUCCGGUgcGCCGuAAAACGCCGu -3'
miRNA:   3'- -UGUucg-AGGCCG--UGGCcUUUUGCGGC- -5'
21940 5' -55.9 NC_004913.1 + 3145 0.66 0.727982
Target:  5'- cGCGAGauggCUGGCagaguggcaaaACUGGAAgcuGACGCCGc -3'
miRNA:   3'- -UGUUCga--GGCCG-----------UGGCCUU---UUGCGGC- -5'
21940 5' -55.9 NC_004913.1 + 57663 0.66 0.717438
Target:  5'- cACcuGCUCCGGUACCGuGcgugaaGCCa -3'
miRNA:   3'- -UGuuCGAGGCCGUGGC-Cuuuug-CGGc -5'
21940 5' -55.9 NC_004913.1 + 9348 0.66 0.716379
Target:  5'- aGCAGG-UCCGGCuggGCCgaagggugauaagGGAGAGCGCgGu -3'
miRNA:   3'- -UGUUCgAGGCCG---UGG-------------CCUUUUGCGgC- -5'
21940 5' -55.9 NC_004913.1 + 20499 0.66 0.706811
Target:  5'- cGC-AGCUCau-CGCCGGGAAGCuGCCa -3'
miRNA:   3'- -UGuUCGAGgccGUGGCCUUUUG-CGGc -5'
21940 5' -55.9 NC_004913.1 + 46358 0.66 0.696112
Target:  5'- gACGcAGCUuaaCCGcGCACUGGAAa--GCCGa -3'
miRNA:   3'- -UGU-UCGA---GGC-CGUGGCCUUuugCGGC- -5'
21940 5' -55.9 NC_004913.1 + 16910 0.66 0.684273
Target:  5'- gGCGGuGCUaaaacacCUGGCACCGGcgcuAAUGCCa -3'
miRNA:   3'- -UGUU-CGA-------GGCCGUGGCCuu--UUGCGGc -5'
21940 5' -55.9 NC_004913.1 + 5596 0.67 0.609215
Target:  5'- -gGGGCUCaGGCGCUGGcAAAUGCUu -3'
miRNA:   3'- ugUUCGAGgCCGUGGCCuUUUGCGGc -5'
21940 5' -55.9 NC_004913.1 + 21274 0.68 0.598341
Target:  5'- gACAGGgauaUCCGuuACCGGGAGaaguggcgcguACGCCGg -3'
miRNA:   3'- -UGUUCg---AGGCcgUGGCCUUU-----------UGCGGC- -5'
21940 5' -55.9 NC_004913.1 + 2125 0.68 0.56592
Target:  5'- -uGAGUUCaauCACCGGAAGACGCuCGa -3'
miRNA:   3'- ugUUCGAGgccGUGGCCUUUUGCG-GC- -5'
21940 5' -55.9 NC_004913.1 + 11408 0.68 0.555208
Target:  5'- gGCAuucuGCaaUGGCACCGGAGccAGCGUCa -3'
miRNA:   3'- -UGUu---CGagGCCGUGGCCUU--UUGCGGc -5'
21940 5' -55.9 NC_004913.1 + 23834 0.69 0.544556
Target:  5'- uACAGGCgggugaauuUCUGGCACauauggCGGAGAAacaGCCGa -3'
miRNA:   3'- -UGUUCG---------AGGCCGUG------GCCUUUUg--CGGC- -5'
21940 5' -55.9 NC_004913.1 + 11321 0.7 0.472226
Target:  5'- cGCuGGCUCCGGUGCCauuGcAGAAUGCCa -3'
miRNA:   3'- -UGuUCGAGGCCGUGGc--C-UUUUGCGGc -5'
21940 5' -55.9 NC_004913.1 + 55537 0.71 0.433127
Target:  5'- --cGGCUCCGGagcuGCCGGu--GCGCCc -3'
miRNA:   3'- uguUCGAGGCCg---UGGCCuuuUGCGGc -5'
21940 5' -55.9 NC_004913.1 + 9591 0.71 0.422708
Target:  5'- gGCAGGC-CCGGUgggggcgACCGGAccucAGGgGCCGa -3'
miRNA:   3'- -UGUUCGaGGCCG-------UGGCCU----UUUgCGGC- -5'
21940 5' -55.9 NC_004913.1 + 54333 0.71 0.414297
Target:  5'- --uGGCUUCuGCACCGGAAGGCGaugaCGg -3'
miRNA:   3'- uguUCGAGGcCGUGGCCUUUUGCg---GC- -5'
21940 5' -55.9 NC_004913.1 + 55463 0.72 0.344259
Target:  5'- gGC-AGCUCCGGaGCCGGAAGGCaucGCgGg -3'
miRNA:   3'- -UGuUCGAGGCCgUGGCCUUUUG---CGgC- -5'
21940 5' -55.9 NC_004913.1 + 59611 0.73 0.297579
Target:  5'- uGCAuGCUCCGGaacaACUGGcgcuGCGCCGg -3'
miRNA:   3'- -UGUuCGAGGCCg---UGGCCuuu-UGCGGC- -5'
21940 5' -55.9 NC_004913.1 + 8570 0.76 0.208031
Target:  5'- -aAGGCcaggCUGGCGCaGGAGAGCGCCGg -3'
miRNA:   3'- ugUUCGa---GGCCGUGgCCUUUUGCGGC- -5'
21940 5' -55.9 NC_004913.1 + 21388 1.08 0.00119
Target:  5'- gACAAGCUCCGGCACCGGAAAACGCCGc -3'
miRNA:   3'- -UGUUCGAGGCCGUGGCCUUUUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.