Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21940 | 5' | -55.9 | NC_004913.1 | + | 21388 | 1.08 | 0.00119 |
Target: 5'- gACAAGCUCCGGCACCGGAAAACGCCGc -3' miRNA: 3'- -UGUUCGAGGCCGUGGCCUUUUGCGGC- -5' |
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21940 | 5' | -55.9 | NC_004913.1 | + | 8570 | 0.76 | 0.208031 |
Target: 5'- -aAGGCcaggCUGGCGCaGGAGAGCGCCGg -3' miRNA: 3'- ugUUCGa---GGCCGUGgCCUUUUGCGGC- -5' |
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21940 | 5' | -55.9 | NC_004913.1 | + | 59611 | 0.73 | 0.297579 |
Target: 5'- uGCAuGCUCCGGaacaACUGGcgcuGCGCCGg -3' miRNA: 3'- -UGUuCGAGGCCg---UGGCCuuu-UGCGGC- -5' |
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21940 | 5' | -55.9 | NC_004913.1 | + | 55463 | 0.72 | 0.344259 |
Target: 5'- gGC-AGCUCCGGaGCCGGAAGGCaucGCgGg -3' miRNA: 3'- -UGuUCGAGGCCgUGGCCUUUUG---CGgC- -5' |
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21940 | 5' | -55.9 | NC_004913.1 | + | 54333 | 0.71 | 0.414297 |
Target: 5'- --uGGCUUCuGCACCGGAAGGCGaugaCGg -3' miRNA: 3'- uguUCGAGGcCGUGGCCUUUUGCg---GC- -5' |
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21940 | 5' | -55.9 | NC_004913.1 | + | 9591 | 0.71 | 0.422708 |
Target: 5'- gGCAGGC-CCGGUgggggcgACCGGAccucAGGgGCCGa -3' miRNA: 3'- -UGUUCGaGGCCG-------UGGCCU----UUUgCGGC- -5' |
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21940 | 5' | -55.9 | NC_004913.1 | + | 55537 | 0.71 | 0.433127 |
Target: 5'- --cGGCUCCGGagcuGCCGGu--GCGCCc -3' miRNA: 3'- uguUCGAGGCCg---UGGCCuuuUGCGGc -5' |
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21940 | 5' | -55.9 | NC_004913.1 | + | 11321 | 0.7 | 0.472226 |
Target: 5'- cGCuGGCUCCGGUGCCauuGcAGAAUGCCa -3' miRNA: 3'- -UGuUCGAGGCCGUGGc--C-UUUUGCGGc -5' |
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21940 | 5' | -55.9 | NC_004913.1 | + | 23834 | 0.69 | 0.544556 |
Target: 5'- uACAGGCgggugaauuUCUGGCACauauggCGGAGAAacaGCCGa -3' miRNA: 3'- -UGUUCG---------AGGCCGUG------GCCUUUUg--CGGC- -5' |
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21940 | 5' | -55.9 | NC_004913.1 | + | 11408 | 0.68 | 0.555208 |
Target: 5'- gGCAuucuGCaaUGGCACCGGAGccAGCGUCa -3' miRNA: 3'- -UGUu---CGagGCCGUGGCCUU--UUGCGGc -5' |
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21940 | 5' | -55.9 | NC_004913.1 | + | 2125 | 0.68 | 0.56592 |
Target: 5'- -uGAGUUCaauCACCGGAAGACGCuCGa -3' miRNA: 3'- ugUUCGAGgccGUGGCCUUUUGCG-GC- -5' |
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21940 | 5' | -55.9 | NC_004913.1 | + | 21274 | 0.68 | 0.598341 |
Target: 5'- gACAGGgauaUCCGuuACCGGGAGaaguggcgcguACGCCGg -3' miRNA: 3'- -UGUUCg---AGGCcgUGGCCUUU-----------UGCGGC- -5' |
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21940 | 5' | -55.9 | NC_004913.1 | + | 5596 | 0.67 | 0.609215 |
Target: 5'- -gGGGCUCaGGCGCUGGcAAAUGCUu -3' miRNA: 3'- ugUUCGAGgCCGUGGCCuUUUGCGGc -5' |
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21940 | 5' | -55.9 | NC_004913.1 | + | 16910 | 0.66 | 0.684273 |
Target: 5'- gGCGGuGCUaaaacacCUGGCACCGGcgcuAAUGCCa -3' miRNA: 3'- -UGUU-CGA-------GGCCGUGGCCuu--UUGCGGc -5' |
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21940 | 5' | -55.9 | NC_004913.1 | + | 46358 | 0.66 | 0.696112 |
Target: 5'- gACGcAGCUuaaCCGcGCACUGGAAa--GCCGa -3' miRNA: 3'- -UGU-UCGA---GGC-CGUGGCCUUuugCGGC- -5' |
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21940 | 5' | -55.9 | NC_004913.1 | + | 20499 | 0.66 | 0.706811 |
Target: 5'- cGC-AGCUCau-CGCCGGGAAGCuGCCa -3' miRNA: 3'- -UGuUCGAGgccGUGGCCUUUUG-CGGc -5' |
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21940 | 5' | -55.9 | NC_004913.1 | + | 9348 | 0.66 | 0.716379 |
Target: 5'- aGCAGG-UCCGGCuggGCCgaagggugauaagGGAGAGCGCgGu -3' miRNA: 3'- -UGUUCgAGGCCG---UGG-------------CCUUUUGCGgC- -5' |
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21940 | 5' | -55.9 | NC_004913.1 | + | 57663 | 0.66 | 0.717438 |
Target: 5'- cACcuGCUCCGGUACCGuGcgugaaGCCa -3' miRNA: 3'- -UGuuCGAGGCCGUGGC-Cuuuug-CGGc -5' |
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21940 | 5' | -55.9 | NC_004913.1 | + | 51172 | 0.66 | 0.727982 |
Target: 5'- uACGuuuaUCCGGUgcGCCGuAAAACGCCGu -3' miRNA: 3'- -UGUucg-AGGCCG--UGGCcUUUUGCGGC- -5' |
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21940 | 5' | -55.9 | NC_004913.1 | + | 3145 | 0.66 | 0.727982 |
Target: 5'- cGCGAGauggCUGGCagaguggcaaaACUGGAAgcuGACGCCGc -3' miRNA: 3'- -UGUUCga--GGCCG-----------UGGCCUU---UUGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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