miRNA: 3'- -GCuAGAC-CuACU---------CAUGGAGAUGCGGG- -5'
miRNA: 3'- -GCUAGACCu-ACUCAuGGAgA-----UGCGGg -5'
miRNA: 3'- gcuAGACCUACUC-AUGGagaUGCG-GG- -5'
miRNA: 3'- -GCUAGACCUACUCAUGGAGAUGCGGG- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 21942 | 3' | -52 | NC_004913.1 | + | 55882 | 0.66 | 0.897901 |
|
Target: 5'- cCGuUCUGcGcUGAuugccgcagGUGCUUCUGCGCCUg -3' miRNA: 3'- -GCuAGAC-CuACU---------CAUGGAGAUGCGGG- -5' |
|||||||
| 21942 | 3' | -52 | NC_004913.1 | + | 44681 | 0.69 | 0.755207 |
|
Target: 5'- gCGAUCUGGuuUGAGU-CCUgUuucaaACGCCa -3' miRNA: 3'- -GCUAGACCu-ACUCAuGGAgA-----UGCGGg -5' |
|||||||
| 21942 | 3' | -52 | NC_004913.1 | + | 55438 | 0.69 | 0.74474 |
|
Target: 5'- --uUCUGGAUGAGcUGCUgg-GCGCaCCg -3' miRNA: 3'- gcuAGACCUACUC-AUGGagaUGCG-GG- -5' |
|||||||
| 21942 | 3' | -52 | NC_004913.1 | + | 24919 | 1.14 | 0.001273 |
|
Target: 5'- cCGAUCUGGAUGAGUACCUCUACGCCCg -3' miRNA: 3'- -GCUAGACCUACUCAUGGAGAUGCGGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home