miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21944 3' -49.4 NC_004913.1 + 37914 0.66 0.964175
Target:  5'- uGCCGGUACuuUGCCAacuaugaccCACGUAUgaaGCg- -3'
miRNA:   3'- -CGGCUAUGu-ACGGU---------GUGCGUAa--UGag -5'
21944 3' -49.4 NC_004913.1 + 21229 0.66 0.964175
Target:  5'- uGCCGucgGCGcguUGCCACGgGCAagGCg- -3'
miRNA:   3'- -CGGCua-UGU---ACGGUGUgCGUaaUGag -5'
21944 3' -49.4 NC_004913.1 + 12730 0.66 0.951766
Target:  5'- uGCUGAUGCAgugcugguUGCCACgACGCcgggGCa- -3'
miRNA:   3'- -CGGCUAUGU--------ACGGUG-UGCGuaa-UGag -5'
21944 3' -49.4 NC_004913.1 + 6381 0.66 0.951766
Target:  5'- aGCCGGUGCAUGUUGacaGCGCGa----- -3'
miRNA:   3'- -CGGCUAUGUACGGUg--UGCGUaaugag -5'
21944 3' -49.4 NC_004913.1 + 19980 0.66 0.951766
Target:  5'- uGCCGAUGagGUG-CGCGCGCA--GCUg -3'
miRNA:   3'- -CGGCUAUg-UACgGUGUGCGUaaUGAg -5'
21944 3' -49.4 NC_004913.1 + 39262 0.67 0.925268
Target:  5'- uCCGGUACAUGgUugAaacCAUUGCUCa -3'
miRNA:   3'- cGGCUAUGUACgGugUgc-GUAAUGAG- -5'
21944 3' -49.4 NC_004913.1 + 54557 0.68 0.91907
Target:  5'- gGCCGGUAUcuucacUGCCACAgGgCGUUGCc- -3'
miRNA:   3'- -CGGCUAUGu-----ACGGUGUgC-GUAAUGag -5'
21944 3' -49.4 NC_004913.1 + 14127 0.68 0.905778
Target:  5'- gGCCGAUGuCAUG-UACACGCAUg---- -3'
miRNA:   3'- -CGGCUAU-GUACgGUGUGCGUAaugag -5'
21944 3' -49.4 NC_004913.1 + 50019 0.68 0.898688
Target:  5'- uGCUGGU---UGCaCAcCACGCAUUGCUUg -3'
miRNA:   3'- -CGGCUAuguACG-GU-GUGCGUAAUGAG- -5'
21944 3' -49.4 NC_004913.1 + 47428 0.72 0.740032
Target:  5'- cGCUGcuuauugGCAUGCCuuGCACGCGUUuacCUCg -3'
miRNA:   3'- -CGGCua-----UGUACGG--UGUGCGUAAu--GAG- -5'
21944 3' -49.4 NC_004913.1 + 36056 0.72 0.706782
Target:  5'- aGCCGA-GCGcGCCGCugGCAUUcGCaUCa -3'
miRNA:   3'- -CGGCUaUGUaCGGUGugCGUAA-UG-AG- -5'
21944 3' -49.4 NC_004913.1 + 54259 0.76 0.514164
Target:  5'- uCCGGUGCAgaaGCCACAgGCGUcacaacacUGCUCu -3'
miRNA:   3'- cGGCUAUGUa--CGGUGUgCGUA--------AUGAG- -5'
21944 3' -49.4 NC_004913.1 + 1598 0.77 0.460778
Target:  5'- uGCCGAUGCAUGCCGccUugGCAaUAUg- -3'
miRNA:   3'- -CGGCUAUGUACGGU--GugCGUaAUGag -5'
21944 3' -49.4 NC_004913.1 + 35934 1.14 0.001983
Target:  5'- aGCCGAUACAUGCCACACGCAUUACUCa -3'
miRNA:   3'- -CGGCUAUGUACGGUGUGCGUAAUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.