Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21944 | 5' | -57.7 | NC_004913.1 | + | 35968 | 1.09 | 0.000548 |
Target: 5'- uUGAUGCGAAUGCCAGCGGCGCGCUCGg -3' miRNA: 3'- -ACUACGCUUACGGUCGCCGCGCGAGC- -5' |
|||||||
21944 | 5' | -57.7 | NC_004913.1 | + | 7812 | 0.69 | 0.409975 |
Target: 5'- gGAUGC---UGCCGGUGGCGCagaaUCGg -3' miRNA: 3'- aCUACGcuuACGGUCGCCGCGcg--AGC- -5' |
|||||||
21944 | 5' | -57.7 | NC_004913.1 | + | 20074 | 0.68 | 0.487222 |
Target: 5'- gGAU-CGGuUGCCAGCuGCGCGCg-- -3' miRNA: 3'- aCUAcGCUuACGGUCGcCGCGCGagc -5' |
|||||||
21944 | 5' | -57.7 | NC_004913.1 | + | 59770 | 0.67 | 0.528343 |
Target: 5'- ---aGCG-GUGCCAGCGGUG-GCUa- -3' miRNA: 3'- acuaCGCuUACGGUCGCCGCgCGAgc -5' |
|||||||
21944 | 5' | -57.7 | NC_004913.1 | + | 52784 | 0.67 | 0.549387 |
Target: 5'- aUGGUGcCGggUGCCuccCGGUGaGUUCGg -3' miRNA: 3'- -ACUAC-GCuuACGGuc-GCCGCgCGAGC- -5' |
|||||||
21944 | 5' | -57.7 | NC_004913.1 | + | 32071 | 0.66 | 0.570682 |
Target: 5'- aUGGUGCauGGAUGCCugaguGCaGCGUGaCUCa -3' miRNA: 3'- -ACUACG--CUUACGGu----CGcCGCGC-GAGc -5' |
|||||||
21944 | 5' | -57.7 | NC_004913.1 | + | 24973 | 0.66 | 0.610544 |
Target: 5'- ---cGCGAaaaucaacccgaaaAUGCCGGaCGGCG-GUUCGg -3' miRNA: 3'- acuaCGCU--------------UACGGUC-GCCGCgCGAGC- -5' |
|||||||
21944 | 5' | -57.7 | NC_004913.1 | + | 59662 | 0.66 | 0.613793 |
Target: 5'- aUGGcUGUGGAaaaucCCAGCuGGCGCGCUUu -3' miRNA: 3'- -ACU-ACGCUUac---GGUCG-CCGCGCGAGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home