miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21953 3' -56.9 NC_004913.1 + 21230 0.66 0.675435
Target:  5'- cUGCCGUcgGCGcGuuGCCACgGGCAa- -3'
miRNA:   3'- cAUGGCA--CGCaCuuCGGUGgCCGUgg -5'
21953 3' -56.9 NC_004913.1 + 21703 0.66 0.653897
Target:  5'- cUACCGUGCGcggaggUGAAGUCAggGGCAa- -3'
miRNA:   3'- cAUGGCACGC------ACUUCGGUggCCGUgg -5'
21953 3' -56.9 NC_004913.1 + 55595 0.66 0.653897
Target:  5'- -cGCUGUccgGUGUGggGUCACCGcuaucugaaGCACUc -3'
miRNA:   3'- caUGGCA---CGCACuuCGGUGGC---------CGUGG- -5'
21953 3' -56.9 NC_004913.1 + 8507 0.66 0.621468
Target:  5'- cGUGCCGgagaGUcUGAaaaAGCCGCCGGaGCUg -3'
miRNA:   3'- -CAUGGCa---CGcACU---UCGGUGGCCgUGG- -5'
21953 3' -56.9 NC_004913.1 + 26228 0.66 0.621468
Target:  5'- cUGCUG-GCGUGAcaa-ACCGGCAUCa -3'
miRNA:   3'- cAUGGCaCGCACUucggUGGCCGUGG- -5'
21953 3' -56.9 NC_004913.1 + 24247 0.66 0.618225
Target:  5'- aUACUGUGCG-GAAgGCCACCaauGGUgugaaacaugugguGCCg -3'
miRNA:   3'- cAUGGCACGCaCUU-CGGUGG---CCG--------------UGG- -5'
21953 3' -56.9 NC_004913.1 + 23425 0.69 0.445321
Target:  5'- -aACCGUaguGCG-GAAGCCAaaGGCAgCCc -3'
miRNA:   3'- caUGGCA---CGCaCUUCGGUggCCGU-GG- -5'
21953 3' -56.9 NC_004913.1 + 48498 0.7 0.407843
Target:  5'- -gGCCGUGgGUGGaaaaAGCCGCUGaGCAgUg -3'
miRNA:   3'- caUGGCACgCACU----UCGGUGGC-CGUgG- -5'
21953 3' -56.9 NC_004913.1 + 21493 0.72 0.300618
Target:  5'- -cACCGguaCGUGAagGGCUACCGGCuCCu -3'
miRNA:   3'- caUGGCac-GCACU--UCGGUGGCCGuGG- -5'
21953 3' -56.9 NC_004913.1 + 20250 0.75 0.19501
Target:  5'- aUGCCGUguuuuccugauaGCGUGAauAGCCGCCcuGCGCCg -3'
miRNA:   3'- cAUGGCA------------CGCACU--UCGGUGGc-CGUGG- -5'
21953 3' -56.9 NC_004913.1 + 57673 1.11 0.000572
Target:  5'- gGUACCGUGCGUGAAGCCACCGGCACCu -3'
miRNA:   3'- -CAUGGCACGCACUUCGGUGGCCGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.