miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21955 3' -48.4 NC_004914.1 + 62447 0.66 0.983076
Target:  5'- uGCUCcggaacaACUGGCgcugCGCCGGucgcauucugaAGGUGACCa -3'
miRNA:   3'- -UGAG-------UGACUGaa--GUGGCU-----------UUCGUUGG- -5'
21955 3' -48.4 NC_004914.1 + 19537 0.66 0.978603
Target:  5'- -aUCACUGACagccUUACCGGuuGCcuucaGACCu -3'
miRNA:   3'- ugAGUGACUGa---AGUGGCUuuCG-----UUGG- -5'
21955 3' -48.4 NC_004914.1 + 19422 0.67 0.966424
Target:  5'- -gUUACUGAUacugUCGguaaagguCUGAAGGCAACCg -3'
miRNA:   3'- ugAGUGACUGa---AGU--------GGCUUUCGUUGG- -5'
21955 3' -48.4 NC_004914.1 + 45720 0.67 0.962739
Target:  5'- cGCUCAuUUGGCgaggUCAUgGAAgacuggguuAGCGACCu -3'
miRNA:   3'- -UGAGU-GACUGa---AGUGgCUU---------UCGUUGG- -5'
21955 3' -48.4 NC_004914.1 + 55843 0.67 0.962739
Target:  5'- cGC-CugUGGCUUCugcACCGgAAGGCGAUg -3'
miRNA:   3'- -UGaGugACUGAAG---UGGC-UUUCGUUGg -5'
21955 3' -48.4 NC_004914.1 + 16803 0.68 0.945209
Target:  5'- cGC-CuCUGACcagaACCGAGAGCAGCa -3'
miRNA:   3'- -UGaGuGACUGaag-UGGCUUUCGUUGg -5'
21955 3' -48.4 NC_004914.1 + 1224 0.68 0.940102
Target:  5'- aGCUCAUgaGCUgaUCAUC-AAAGCAGCCu -3'
miRNA:   3'- -UGAGUGacUGA--AGUGGcUUUCGUUGG- -5'
21955 3' -48.4 NC_004914.1 + 45381 0.69 0.934698
Target:  5'- cGCUCACUG-CUgucaUCAuCCaGAAGCAAUCc -3'
miRNA:   3'- -UGAGUGACuGA----AGU-GGcUUUCGUUGG- -5'
21955 3' -48.4 NC_004914.1 + 48405 0.69 0.928995
Target:  5'- cGCUCACUGGCUa-ACUGAGGcCGACg -3'
miRNA:   3'- -UGAGUGACUGAagUGGCUUUcGUUGg -5'
21955 3' -48.4 NC_004914.1 + 50335 0.69 0.928995
Target:  5'- gAC-CGCUGGCgagaACuCGAAggGGCAACCg -3'
miRNA:   3'- -UGaGUGACUGaag-UG-GCUU--UCGUUGG- -5'
21955 3' -48.4 NC_004914.1 + 33914 0.7 0.88852
Target:  5'- uGCUCACUGugUggcggaaaUCAUgGcAAAGCcGCCa -3'
miRNA:   3'- -UGAGUGACugA--------AGUGgC-UUUCGuUGG- -5'
21955 3' -48.4 NC_004914.1 + 19866 0.7 0.88852
Target:  5'- uACUCugaGCUGGCgcagUCACCGAAauuucAGCAGa- -3'
miRNA:   3'- -UGAG---UGACUGa---AGUGGCUU-----UCGUUgg -5'
21955 3' -48.4 NC_004914.1 + 8015 0.71 0.827684
Target:  5'- gACggCGCUGACaguUUCACCGGAugcgcucAGCGGCa -3'
miRNA:   3'- -UGa-GUGACUG---AAGUGGCUU-------UCGUUGg -5'
21955 3' -48.4 NC_004914.1 + 8545 0.73 0.757849
Target:  5'- cGCUgCugUGACUgCACgGGucGCAGCCu -3'
miRNA:   3'- -UGA-GugACUGAaGUGgCUuuCGUUGG- -5'
21955 3' -48.4 NC_004914.1 + 58107 0.75 0.66887
Target:  5'- gGCUgACUGACUggCGCUGAuuuucucAGCGGCCc -3'
miRNA:   3'- -UGAgUGACUGAa-GUGGCUu------UCGUUGG- -5'
21955 3' -48.4 NC_004914.1 + 4256 0.76 0.566092
Target:  5'- cGCUCACUGAacgUUUCGCUG-AAGUGGCCc -3'
miRNA:   3'- -UGAGUGACU---GAAGUGGCuUUCGUUGG- -5'
21955 3' -48.4 NC_004914.1 + 4384 1.13 0.003249
Target:  5'- gACUCACUGACUUCACCGAAAGCAACCu -3'
miRNA:   3'- -UGAGUGACUGAAGUGGCUUUCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.