miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21959 5' -52.5 NC_004914.1 + 18767 0.66 0.884647
Target:  5'- --aUGCGGuugugaaccaGUCGCAgcauaauauucaUCCACCGCAgCCu -3'
miRNA:   3'- cugACGCC----------UAGUGU------------AGGUGGUGUaGG- -5'
21959 5' -52.5 NC_004914.1 + 25428 0.66 0.876983
Target:  5'- cGAUgGCGGAUCAgCgAUUCGCuCAgGUCCu -3'
miRNA:   3'- -CUGaCGCCUAGU-G-UAGGUG-GUgUAGG- -5'
21959 5' -52.5 NC_004914.1 + 19994 0.66 0.860887
Target:  5'- uGCUGCGGGUCGgCGUCaauggACaaaaACGUCUg -3'
miRNA:   3'- cUGACGCCUAGU-GUAGg----UGg---UGUAGG- -5'
21959 5' -52.5 NC_004914.1 + 32481 0.67 0.852469
Target:  5'- --gUGCGGcaauuucaccguGUCGCAUCCcuguaaaaacaGCCACuGUCCa -3'
miRNA:   3'- cugACGCC------------UAGUGUAGG-----------UGGUG-UAGG- -5'
21959 5' -52.5 NC_004914.1 + 21558 0.67 0.825836
Target:  5'- --gUGCuG-UCGCGUUCugCGCAUCCg -3'
miRNA:   3'- cugACGcCuAGUGUAGGugGUGUAGG- -5'
21959 5' -52.5 NC_004914.1 + 13660 0.68 0.807026
Target:  5'- cAUUGCGGAUCACcaGUCC--UACAUUCu -3'
miRNA:   3'- cUGACGCCUAGUG--UAGGugGUGUAGG- -5'
21959 5' -52.5 NC_004914.1 + 24485 0.68 0.805102
Target:  5'- cGCUGacaccacCGGAUCACcauuuuuAUCCACgGCAUCa -3'
miRNA:   3'- cUGAC-------GCCUAGUG-------UAGGUGgUGUAGg -5'
21959 5' -52.5 NC_004914.1 + 20393 0.69 0.746459
Target:  5'- -uCUGCGGccUgACGUCUGCCACGauaUCCg -3'
miRNA:   3'- cuGACGCCu-AgUGUAGGUGGUGU---AGG- -5'
21959 5' -52.5 NC_004914.1 + 46704 0.69 0.735882
Target:  5'- gGACUGCGGuuccUCGCGUUCACgucggCGCAUUUc -3'
miRNA:   3'- -CUGACGCCu---AGUGUAGGUG-----GUGUAGG- -5'
21959 5' -52.5 NC_004914.1 + 21418 0.7 0.648413
Target:  5'- -gUUGUGGuaaaACGaCCACCACGUCCg -3'
miRNA:   3'- cuGACGCCuag-UGUaGGUGGUGUAGG- -5'
21959 5' -52.5 NC_004914.1 + 60485 0.73 0.516742
Target:  5'- -cCUGCGGAUCAacgCCACCuGC-UCCg -3'
miRNA:   3'- cuGACGCCUAGUguaGGUGG-UGuAGG- -5'
21959 5' -52.5 NC_004914.1 + 5012 0.73 0.516742
Target:  5'- cGCUGCuGAcucaUACGUCCGCCuGCAUCCa -3'
miRNA:   3'- cUGACGcCUa---GUGUAGGUGG-UGUAGG- -5'
21959 5' -52.5 NC_004914.1 + 20568 0.73 0.475002
Target:  5'- aGCUGCGGAugcgUCACccUCUguuGCCAUAUCCg -3'
miRNA:   3'- cUGACGCCU----AGUGu-AGG---UGGUGUAGG- -5'
21959 5' -52.5 NC_004914.1 + 11072 1.13 0.001232
Target:  5'- gGACUGCGGAUCACAUCCACCACAUCCg -3'
miRNA:   3'- -CUGACGCCUAGUGUAGGUGGUGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.