miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21969	3'	-52.9	NC_004914.1	+	12622	0.66	0.867769
	Target:  5'- uGCAUAUgaGGcACCACCCGAUGuucgacgccgGGCGa -3' miRNA:   3'- -UGUGUGggCUaUGGUGGGCUAU----------UCGU- -5'
21969	3'	-52.9	NC_004914.1	+	58651	0.67	0.785806
	Target:  5'- aGCACGCCUauUGCCGCCCacUGAGaCGg -3' miRNA:   3'- -UGUGUGGGcuAUGGUGGGcuAUUC-GU- -5'
21969	3'	-52.9	NC_004914.1	+	12052	0.69	0.668662
	Target:  5'- aACACAUCCugcuUACCAUCCGGUuucguguaacAGGCAa -3' miRNA:   3'- -UGUGUGGGcu--AUGGUGGGCUA----------UUCGU- -5'
21969	3'	-52.9	NC_004914.1	+	21050	0.72	0.547004
	Target:  5'- gUAUugCUGAUGCUgACCCGAUgGAGCAg -3' miRNA:   3'- uGUGugGGCUAUGG-UGGGCUA-UUCGU- -5'
21969	3'	-52.9	NC_004914.1	+	13405	0.72	0.547004
	Target:  5'- uGC-CACCUGAUACCGCaaaCGgAUAGGCu -3' miRNA:   3'- -UGuGUGGGCUAUGGUGg--GC-UAUUCGu -5'
21969	3'	-52.9	NC_004914.1	+	54312	0.73	0.462925
	Target:  5'- uGCAUgguGCCgGGUGCCuCCCGGUGAGUu -3' miRNA:   3'- -UGUG---UGGgCUAUGGuGGGCUAUUCGu -5'
21969	3'	-52.9	NC_004914.1	+	22230	1.09	0.002101
	Target:  5'- uACACACCCGAUACCACCCGAUAAGCAg -3' miRNA:   3'- -UGUGUGGGCUAUGGUGGGCUAUUCGU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home