miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21976 3' -48.3 NC_004914.1 + 39475 0.66 0.985049
Target:  5'- ----uUGAGGcucaGAGCUGGACGCGUCa- -3'
miRNA:   3'- uguuuGCUUC----UUCGGCUUGCGUAGag -5'
21976 3' -48.3 NC_004914.1 + 53398 0.66 0.985049
Target:  5'- -aAAACGcAGAAcuGCUcuGGAUGCAUCUCu -3'
miRNA:   3'- ugUUUGCuUCUU--CGG--CUUGCGUAGAG- -5'
21976 3' -48.3 NC_004914.1 + 39178 0.66 0.980697
Target:  5'- gGCAGG-GAAGcuGGCUGAACGUGUCg- -3'
miRNA:   3'- -UGUUUgCUUCu-UCGGCUUGCGUAGag -5'
21976 3' -48.3 NC_004914.1 + 36069 0.66 0.975463
Target:  5'- aACAAAgu--GAAGCCGAGCGCGccgCUg -3'
miRNA:   3'- -UGUUUgcuuCUUCGGCUUGCGUa--GAg -5'
21976 3' -48.3 NC_004914.1 + 37606 0.67 0.971863
Target:  5'- aAUAAACGggG-AGCUGuaugcacaaaGCAUCUCc -3'
miRNA:   3'- -UGUUUGCuuCuUCGGCuug-------CGUAGAG- -5'
21976 3' -48.3 NC_004914.1 + 24031 0.67 0.969261
Target:  5'- cCGcgUGAGGAuGGCgCGGGCGCAUCg- -3'
miRNA:   3'- uGUuuGCUUCU-UCG-GCUUGCGUAGag -5'
21976 3' -48.3 NC_004914.1 + 4116 0.67 0.965773
Target:  5'- uACGGAUGAGcGAAGCCac-CGCGUCa- -3'
miRNA:   3'- -UGUUUGCUU-CUUCGGcuuGCGUAGag -5'
21976 3' -48.3 NC_004914.1 + 44458 0.69 0.901391
Target:  5'- uACAagGACGcAGAAGCU--GCGCAUCUg -3'
miRNA:   3'- -UGU--UUGCuUCUUCGGcuUGCGUAGAg -5'
21976 3' -48.3 NC_004914.1 + 56558 0.7 0.886482
Target:  5'- -gGAGCGAcuaaaAGAAGCCGGAUuacugGCAUCa- -3'
miRNA:   3'- ugUUUGCU-----UCUUCGGCUUG-----CGUAGag -5'
21976 3' -48.3 NC_004914.1 + 8981 0.71 0.835145
Target:  5'- aGCGAACGAggAGAAGCCGGAC-CAc--- -3'
miRNA:   3'- -UGUUUGCU--UCUUCGGCUUGcGUagag -5'
21976 3' -48.3 NC_004914.1 + 18081 0.75 0.641294
Target:  5'- gGCuGGCGAucaGGAGGCUGcAACGCGUCUg -3'
miRNA:   3'- -UGuUUGCU---UCUUCGGC-UUGCGUAGAg -5'
21976 3' -48.3 NC_004914.1 + 38692 0.77 0.549688
Target:  5'- gACAAG-GAuGAAGCCGAGCGCAUUg- -3'
miRNA:   3'- -UGUUUgCUuCUUCGGCUUGCGUAGag -5'
21976 3' -48.3 NC_004914.1 + 41846 1.1 0.004802
Target:  5'- cACAAACGAAGAAGCCGAACGCAUCUCu -3'
miRNA:   3'- -UGUUUGCUUCUUCGGCUUGCGUAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.