Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21977 | 3' | -49.3 | NC_004914.1 | + | 11224 | 0.67 | 0.942604 |
Target: 5'- uACAGACAG-GAGCUgucgUCGgcgcggggauccCCAGACg -3' miRNA: 3'- cUGUUUGUCuCUCGGaa--AGU------------GGUCUG- -5' |
|||||||
21977 | 3' | -49.3 | NC_004914.1 | + | 5304 | 0.67 | 0.937303 |
Target: 5'- aAUGAACAGGGAGagaUUgucCACCAGGCc -3' miRNA: 3'- cUGUUUGUCUCUCgg-AAa--GUGGUCUG- -5' |
|||||||
21977 | 3' | -49.3 | NC_004914.1 | + | 8611 | 0.67 | 0.9317 |
Target: 5'- aGCGGGCAGAGGcuGCCacugUCagugcugaagagGCCAGACg -3' miRNA: 3'- cUGUUUGUCUCU--CGGaa--AG------------UGGUCUG- -5' |
|||||||
21977 | 3' | -49.3 | NC_004914.1 | + | 8404 | 0.68 | 0.913063 |
Target: 5'- cGGCAAccaGCAGGGcGGCUgaa-GCCGGACa -3' miRNA: 3'- -CUGUU---UGUCUC-UCGGaaagUGGUCUG- -5' |
|||||||
21977 | 3' | -49.3 | NC_004914.1 | + | 11685 | 0.68 | 0.891715 |
Target: 5'- cGACAAAgGGGGAGCCUuauuugUUCAgUGGGg -3' miRNA: 3'- -CUGUUUgUCUCUCGGA------AAGUgGUCUg -5' |
|||||||
21977 | 3' | -49.3 | NC_004914.1 | + | 60181 | 0.7 | 0.80288 |
Target: 5'- cGACAAguacACAGAG-GCUcUUCACCAG-Cg -3' miRNA: 3'- -CUGUU----UGUCUCuCGGaAAGUGGUCuG- -5' |
|||||||
21977 | 3' | -49.3 | NC_004914.1 | + | 56508 | 0.72 | 0.743875 |
Target: 5'- uGACAcauACuGAGAGCCUUuaUCgcugugauggaugguGCCAGACg -3' miRNA: 3'- -CUGUu--UGuCUCUCGGAA--AG---------------UGGUCUG- -5' |
|||||||
21977 | 3' | -49.3 | NC_004914.1 | + | 53367 | 0.72 | 0.739484 |
Target: 5'- aGGCAGauACAGAGAGaaUUUCGUCAGGCa -3' miRNA: 3'- -CUGUU--UGUCUCUCggAAAGUGGUCUG- -5' |
|||||||
21977 | 3' | -49.3 | NC_004914.1 | + | 62567 | 0.72 | 0.739484 |
Target: 5'- uGACuGGCuGAGAGCCUcaUUCACCAu-- -3' miRNA: 3'- -CUGuUUGuCUCUCGGA--AAGUGGUcug -5' |
|||||||
21977 | 3' | -49.3 | NC_004914.1 | + | 45931 | 1.09 | 0.003904 |
Target: 5'- uGACAAACAGAGAGCCUUUCACCAGACc -3' miRNA: 3'- -CUGUUUGUCUCUCGGAAAGUGGUCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home