miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21982 3' -58.2 NC_004914.1 + 20017 0.66 0.592604
Target:  5'- uCUGGcgaucaguAAGCUGUgcgUGCUGCGGGuCGGCg -3'
miRNA:   3'- cGGCCu-------UUCGGCA---ACGGCGUCC-GCUG- -5'
21982 3' -58.2 NC_004914.1 + 12845 0.66 0.581947
Target:  5'- aCCGGAucGCCGUaaaccUGCC-CcGGCGuCg -3'
miRNA:   3'- cGGCCUuuCGGCA-----ACGGcGuCCGCuG- -5'
21982 3' -58.2 NC_004914.1 + 57567 0.66 0.560759
Target:  5'- uGCCGGGAAuaaca-GCCuGCAGGUGACg -3'
miRNA:   3'- -CGGCCUUUcggcaaCGG-CGUCCGCUG- -5'
21982 3' -58.2 NC_004914.1 + 21010 0.67 0.529403
Target:  5'- -aCGGAcGGUUucagGCCGguGGCGGCg -3'
miRNA:   3'- cgGCCUuUCGGcaa-CGGCguCCGCUG- -5'
21982 3' -58.2 NC_004914.1 + 58711 0.68 0.48866
Target:  5'- aUCGGcu-GCCGUucuggcgcugauUGCCGCAGGUG-Cu -3'
miRNA:   3'- cGGCCuuuCGGCA------------ACGGCGUCCGCuG- -5'
21982 3' -58.2 NC_004914.1 + 55934 0.68 0.459091
Target:  5'- aGCUGGGu-GCUGgaguacGCCGCGGGCaACg -3'
miRNA:   3'- -CGGCCUuuCGGCaa----CGGCGUCCGcUG- -5'
21982 3' -58.2 NC_004914.1 + 60605 0.69 0.400295
Target:  5'- cGCCGGAGGuGCCGguggcuucacgcacgGUaccggaGCAGGUGGCg -3'
miRNA:   3'- -CGGCCUUU-CGGCaa-------------CGg-----CGUCCGCUG- -5'
21982 3' -58.2 NC_004914.1 + 8886 0.7 0.343296
Target:  5'- aCCGGAGAGCgGggGCCuaaAGGgGACc -3'
miRNA:   3'- cGGCCUUUCGgCaaCGGcg-UCCgCUG- -5'
21982 3' -58.2 NC_004914.1 + 50309 0.7 0.335306
Target:  5'- cGCCGGAAuucaccgcucGCCuuGUUGaCCGCuGGCGAg -3'
miRNA:   3'- -CGGCCUUu---------CGG--CAAC-GGCGuCCGCUg -5'
21982 3' -58.2 NC_004914.1 + 26149 0.71 0.327453
Target:  5'- uGCCGGuuuGUCac-GCCaGCAGGCGGCg -3'
miRNA:   3'- -CGGCCuuuCGGcaaCGG-CGUCCGCUG- -5'
21982 3' -58.2 NC_004914.1 + 29504 0.71 0.307677
Target:  5'- uGCCGGAuaccaaaacAGCCGUucuuguUGCCGUggaguuugacaggaaAGGUGACu -3'
miRNA:   3'- -CGGCCUu--------UCGGCA------ACGGCG---------------UCCGCUG- -5'
21982 3' -58.2 NC_004914.1 + 47767 0.72 0.273595
Target:  5'- aGCCaGGggGGCaugggcaccaucaGUUGCUGC-GGCGGCu -3'
miRNA:   3'- -CGG-CCuuUCGg------------CAACGGCGuCCGCUG- -5'
21982 3' -58.2 NC_004914.1 + 56847 1.1 0.000483
Target:  5'- aGCCGGAAAGCCGUUGCCGCAGGCGACc -3'
miRNA:   3'- -CGGCCUUUCGGCAACGGCGUCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.