Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21982 | 5' | -51.9 | NC_004914.1 | + | 35842 | 0.66 | 0.932321 |
Target: 5'- uCUGUUAGUUCGUa--GAAACGcuCCUGg -3' miRNA: 3'- -GGCAGUCAAGCAccgCUUUGCu-GGAC- -5' |
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21982 | 5' | -51.9 | NC_004914.1 | + | 21232 | 0.66 | 0.914093 |
Target: 5'- gCCGUCGGcgCGUugccacgGGCaAGGCgGGCCUGu -3' miRNA: 3'- -GGCAGUCaaGCA-------CCGcUUUG-CUGGAC- -5' |
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21982 | 5' | -51.9 | NC_004914.1 | + | 19517 | 0.67 | 0.886699 |
Target: 5'- gCCGggugCAGUUCGUGcGCuGAauacgccGAUGACCg- -3' miRNA: 3'- -GGCa---GUCAAGCAC-CG-CU-------UUGCUGGac -5' |
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21982 | 5' | -51.9 | NC_004914.1 | + | 26261 | 0.7 | 0.762341 |
Target: 5'- aCCGUCAuGUUUuUGGCaaGAGACGccGCCUGc -3' miRNA: 3'- -GGCAGU-CAAGcACCG--CUUUGC--UGGAC- -5' |
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21982 | 5' | -51.9 | NC_004914.1 | + | 57476 | 0.71 | 0.709838 |
Target: 5'- uCCGgggCGGUUCaaaaGUGGCGAcaAACaACCUGa -3' miRNA: 3'- -GGCa--GUCAAG----CACCGCU--UUGcUGGAC- -5' |
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21982 | 5' | -51.9 | NC_004914.1 | + | 56813 | 1.01 | 0.010585 |
Target: 5'- aCCGUCAGUUCGUGGCaGAACGACCUGa -3' miRNA: 3'- -GGCAGUCAAGCACCGcUUUGCUGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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