miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21992 5' -55.9 NC_004914.1 + 3145 0.66 0.740465
Target:  5'- cGCGAGauggCUGGCagaguggcaaaACUGGAAgcuGACGCCGc -3'
miRNA:   3'- -UGUUCga--GGCCG-----------UGGCCUU---UUGCGGC- -5'
21992 5' -55.9 NC_004914.1 + 60500 0.66 0.730068
Target:  5'- cACcuGCUCCGGUACCGuGcgugaaGCCa -3'
miRNA:   3'- -UGuuCGAGGCCGUGGC-Cuuuug-CGGc -5'
21992 5' -55.9 NC_004914.1 + 9349 0.66 0.729023
Target:  5'- aGCAGG-UCCGGCuggGCCgaagggugauaagGGAGAGCGCgGu -3'
miRNA:   3'- -UGUUCgAGGCCG---UGG-------------CCUUUUGCGgC- -5'
21992 5' -55.9 NC_004914.1 + 20500 0.66 0.719576
Target:  5'- cGC-AGCUCau-CGCCGGGAAGCuGCCa -3'
miRNA:   3'- -UGuUCGAGgccGUGGCCUUUUG-CGGc -5'
21992 5' -55.9 NC_004914.1 + 46357 0.66 0.708999
Target:  5'- gACGcAGCUuaaCCGcGCACUGGAAa--GCCGa -3'
miRNA:   3'- -UGU-UCGA---GGC-CGUGGCCUUuugCGGC- -5'
21992 5' -55.9 NC_004914.1 + 16911 0.66 0.69728
Target:  5'- gGCGGuGCUaaaacacCUGGCACCGGcgcuAAUGCCa -3'
miRNA:   3'- -UGUU-CGA-------GGCCGUGGCCuu--UUGCGGc -5'
21992 5' -55.9 NC_004914.1 + 5597 0.67 0.622631
Target:  5'- -gGGGCUCaGGCGCUGGcAAAUGCUu -3'
miRNA:   3'- ugUUCGAGgCCGUGGCCuUUUGCGGc -5'
21992 5' -55.9 NC_004914.1 + 57649 0.67 0.621544
Target:  5'- uGCAGGCUguuauucCCGGCAaagCGGAAAGCcagcguauGCCa -3'
miRNA:   3'- -UGUUCGA-------GGCCGUg--GCCUUUUG--------CGGc -5'
21992 5' -55.9 NC_004914.1 + 21275 0.68 0.611769
Target:  5'- gACAGGgauaUCCGuuACCGGGAGaaguggcgcguACGCCGg -3'
miRNA:   3'- -UGUUCg---AGGCcgUGGCCUUU-----------UGCGGC- -5'
21992 5' -55.9 NC_004914.1 + 2128 0.68 0.579321
Target:  5'- -uGAGUUCaauCACCGGAAGACGCuCGa -3'
miRNA:   3'- ugUUCGAGgccGUGGCCUUUUGCG-GC- -5'
21992 5' -55.9 NC_004914.1 + 11412 0.68 0.568579
Target:  5'- gGCAuucuGCaaUGGCACCGGAGccAGCGUCa -3'
miRNA:   3'- -UGUu---CGagGCCGUGGCCUU--UUGCGGc -5'
21992 5' -55.9 NC_004914.1 + 23835 0.69 0.557888
Target:  5'- uACAGGCgggugaauuUCUGGCACauauggCGGAGAAacaGCCGa -3'
miRNA:   3'- -UGUUCG---------AGGCCGUG------GCCUUUUg--CGGC- -5'
21992 5' -55.9 NC_004914.1 + 11322 0.7 0.485045
Target:  5'- cGCuGGCUCCGGUGCCauuGcAGAAUGCCa -3'
miRNA:   3'- -UGuUCGAGGCCGUGGc--C-UUUUGCGGc -5'
21992 5' -55.9 NC_004914.1 + 9592 0.71 0.434941
Target:  5'- gGCAGGC-CCGGUgggggcgACCGGAccucAGGgGCCGa -3'
miRNA:   3'- -UGUUCGaGGCCG-------UGGCCU----UUUgCGGC- -5'
21992 5' -55.9 NC_004914.1 + 55837 0.71 0.426412
Target:  5'- --uGGCUUCuGCACCGGAAGGCGaugaCGg -3'
miRNA:   3'- uguUCGAGGcCGUGGCCUUUUGCg---GC- -5'
21992 5' -55.9 NC_004914.1 + 62451 0.73 0.307549
Target:  5'- uGCAuGCUCCGGaacaACUGGcgcuGCGCCGg -3'
miRNA:   3'- -UGUuCGAGGCCg---UGGCCuuu-UGCGGC- -5'
21992 5' -55.9 NC_004914.1 + 8571 0.76 0.215728
Target:  5'- -aAGGCcaggCUGGCGCaGGAGAGCGCCGg -3'
miRNA:   3'- ugUUCGa---GGCCGUGgCCUUUUGCGGC- -5'
21992 5' -55.9 NC_004914.1 + 21389 1.08 0.001262
Target:  5'- gACAAGCUCCGGCACCGGAAAACGCCGc -3'
miRNA:   3'- -UGUUCGAGGCCGUGGCCUUUUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.