miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
220 3' -53 AC_000008.1 + 13983 0.66 0.748361
Target:  5'- cGACAGCagcguccugGAUuuGGGAGGGAGUGGc- -3'
miRNA:   3'- uCUGUCG---------CUAcgCCUUCUCUCACUcc -5'
220 3' -53 AC_000008.1 + 4907 0.66 0.748361
Target:  5'- aAGAUAGUgGGUGCGGAuGGAcAGgaacagGAGGa -3'
miRNA:   3'- -UCUGUCG-CUACGCCU-UCUcUCa-----CUCC- -5'
220 3' -53 AC_000008.1 + 10346 0.66 0.69272
Target:  5'- cGGCGGCGGcugGCGGuAGAGGGgccagcguAGGg -3'
miRNA:   3'- uCUGUCGCUa--CGCCuUCUCUCac------UCC- -5'
220 3' -53 AC_000008.1 + 24764 0.67 0.658463
Target:  5'- uGAC-GCGGUa-GGAGGAGGG-GAGGg -3'
miRNA:   3'- uCUGuCGCUAcgCCUUCUCUCaCUCC- -5'
220 3' -53 AC_000008.1 + 955 0.71 0.407385
Target:  5'- uGACGaCGAgGauGAAGAGGGUGAGGa -3'
miRNA:   3'- uCUGUcGCUaCgcCUUCUCUCACUCC- -5'
220 3' -53 AC_000008.1 + 15079 0.72 0.38828
Target:  5'- uGGCAGCGgcGCGGAAGAGAa----- -3'
miRNA:   3'- uCUGUCGCuaCGCCUUCUCUcacucc -5'
220 3' -53 AC_000008.1 + 9399 0.74 0.286567
Target:  5'- uGGCGGCGGUGgGGGAGGGGG-GAc- -3'
miRNA:   3'- uCUGUCGCUACgCCUUCUCUCaCUcc -5'
220 3' -53 AC_000008.1 + 29839 1.11 0.00069
Target:  5'- cAGACAGCGAUGCGGAAGAGAGUGAGGa -3'
miRNA:   3'- -UCUGUCGCUACGCCUUCUCUCACUCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.