miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
220 5' -58.1 AC_000008.1 + 10035 0.66 0.464733
Target:  5'- cGCCCUCuucCUCCCaugcgUGUgaccccgaAGCCCCUCa -3'
miRNA:   3'- -CGGGGGu--GGGGGaaa--AUA--------UCGGGGGG- -5'
220 5' -58.1 AC_000008.1 + 18312 0.66 0.464733
Target:  5'- gGgUCCUGCCUCCUUcgcgAGCCaCCCUg -3'
miRNA:   3'- -CgGGGGUGGGGGAAaauaUCGG-GGGG- -5'
220 5' -58.1 AC_000008.1 + 24116 0.66 0.454677
Target:  5'- cGCCUaCCACcuuCCCCgucga-GGCaCCCCCg -3'
miRNA:   3'- -CGGG-GGUG---GGGGaaaauaUCG-GGGGG- -5'
220 5' -58.1 AC_000008.1 + 30015 0.66 0.454677
Target:  5'- aCCgCUACCCCUcccacuUAGCCUCCUu -3'
miRNA:   3'- cGGgGGUGGGGGaaaau-AUCGGGGGG- -5'
220 5' -58.1 AC_000008.1 + 24061 0.66 0.450688
Target:  5'- aGCCUaaCCGCCCCCUcugaguucGCCaCCaCCg -3'
miRNA:   3'- -CGGG--GGUGGGGGAaaauau--CGG-GG-GG- -5'
220 5' -58.1 AC_000008.1 + 18802 0.66 0.434926
Target:  5'- cGCCgCgCGCCCgCUUUccaagAUGGCUaCCCCu -3'
miRNA:   3'- -CGGgG-GUGGGgGAAAa----UAUCGG-GGGG- -5'
220 5' -58.1 AC_000008.1 + 26299 0.67 0.388723
Target:  5'- aGCgCCgUAUCCCUgccgcauggcAGCCCCCCg -3'
miRNA:   3'- -CG-GGgGUGGGGGaaaaua----UCGGGGGG- -5'
220 5' -58.1 AC_000008.1 + 35804 0.67 0.378802
Target:  5'- cGUCaCCCGCCCCgUUcccacGCCCCgCg -3'
miRNA:   3'- -CGG-GGGUGGGGgAAaauauCGGGGgG- -5'
220 5' -58.1 AC_000008.1 + 35804 0.67 0.378802
Target:  5'- cGUCaCCCGCCCCgUUcccacGCCCCgCg -3'
miRNA:   3'- -CGG-GGGUGGGGgAAaauauCGGGGgG- -5'
220 5' -58.1 AC_000008.1 + 19188 0.68 0.335892
Target:  5'- cGCCCUgGCUCCCaag---GGUgCCCCa -3'
miRNA:   3'- -CGGGGgUGGGGGaaaauaUCGgGGGG- -5'
220 5' -58.1 AC_000008.1 + 17432 0.69 0.304196
Target:  5'- uGCgCCUACCCCCggcuaucGUGGCUacaccuaccgCCCCa -3'
miRNA:   3'- -CGgGGGUGGGGGaaaa---UAUCGG----------GGGG- -5'
220 5' -58.1 AC_000008.1 + 18307 0.71 0.217152
Target:  5'- aUCCCCGCCCUCccgUAgaggAGCCUCCa -3'
miRNA:   3'- cGGGGGUGGGGGaaaAUa---UCGGGGGg -5'
220 5' -58.1 AC_000008.1 + 29194 0.73 0.157045
Target:  5'- cGCUcaCCCACCCCaugccauggGGUCCCCCa -3'
miRNA:   3'- -CGG--GGGUGGGGgaaaaua--UCGGGGGG- -5'
220 5' -58.1 AC_000008.1 + 11998 0.73 0.152321
Target:  5'- cGCCgCCGCCUCCccg---GGCgCCCCCa -3'
miRNA:   3'- -CGGgGGUGGGGGaaaauaUCG-GGGGG- -5'
220 5' -58.1 AC_000008.1 + 25513 0.79 0.060873
Target:  5'- aGCCCCgGCCaCCCUacgcUGGCCCCUCu -3'
miRNA:   3'- -CGGGGgUGG-GGGAaaauAUCGGGGGG- -5'
220 5' -58.1 AC_000008.1 + 33561 0.8 0.048116
Target:  5'- aGCCCCCcgcucccucuuuACCCCCUU---UAGCCCCUg -3'
miRNA:   3'- -CGGGGG------------UGGGGGAAaauAUCGGGGGg -5'
220 5' -58.1 AC_000008.1 + 27256 0.83 0.030664
Target:  5'- uGCCCCUGCCCCCUcucccggcggGUccggAGCCCCCCc -3'
miRNA:   3'- -CGGGGGUGGGGGAaaa-------UA----UCGGGGGG- -5'
220 5' -58.1 AC_000008.1 + 29873 1.13 0.000144
Target:  5'- cGCCCCCACCCCCUUUUAUAGCCCCCCu -3'
miRNA:   3'- -CGGGGGUGGGGGAAAAUAUCGGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.