miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22005 3' -56.9 NC_004914.1 + 21234 0.66 0.688483
Target:  5'- cUGCCGUcgGCGcGuuGCCACgGGCAa- -3'
miRNA:   3'- cAUGGCA--CGCaCuuCGGUGgCCGUgg -5'
22005 3' -56.9 NC_004914.1 + 57328 0.66 0.677813
Target:  5'- aUACCGgggGCgGUGAuggugGGCuCACCaGCGCUg -3'
miRNA:   3'- cAUGGCa--CG-CACU-----UCG-GUGGcCGUGG- -5'
22005 3' -56.9 NC_004914.1 + 21704 0.66 0.667101
Target:  5'- cUACCGUGCGcggaggUGAAGUCAggGGCAa- -3'
miRNA:   3'- cAUGGCACGC------ACUUCGGUggCCGUgg -5'
22005 3' -56.9 NC_004914.1 + 8508 0.66 0.634817
Target:  5'- cGUGCCGgagaGUcUGAaaaAGCCGCCGGaGCUg -3'
miRNA:   3'- -CAUGGCa---CGcACU---UCGGUGGCCgUGG- -5'
22005 3' -56.9 NC_004914.1 + 26232 0.66 0.634817
Target:  5'- cUGCUG-GCGUGAcaa-ACCGGCAUCa -3'
miRNA:   3'- cAUGGCaCGCACUucggUGGCCGUGG- -5'
22005 3' -56.9 NC_004914.1 + 24248 0.66 0.631583
Target:  5'- aUACUGUGCG-GAAgGCCACCaauGGUgugaaacaugugguGCCg -3'
miRNA:   3'- cAUGGCACGCaCUU-CGGUGG---CCG--------------UGG- -5'
22005 3' -56.9 NC_004914.1 + 23426 0.69 0.457809
Target:  5'- -aACCGUaguGCG-GAAGCCAaaGGCAgCCc -3'
miRNA:   3'- caUGGCA---CGCaCUUCGGUggCCGU-GG- -5'
22005 3' -56.9 NC_004914.1 + 48497 0.7 0.419831
Target:  5'- -gGCCGUGgGUGGaaaaAGCCGCUGaGCAgUg -3'
miRNA:   3'- caUGGCACgCACU----UCGGUGGC-CGUgG- -5'
22005 3' -56.9 NC_004914.1 + 21494 0.72 0.310629
Target:  5'- -cACCGguaCGUGAagGGCUACCGGCuCCu -3'
miRNA:   3'- caUGGCac-GCACU--UCGGUGGCCGuGG- -5'
22005 3' -56.9 NC_004914.1 + 20254 0.75 0.202312
Target:  5'- aUGCCGUguuuuccugauaGCGUGAauAGCCGCCcuGCGCCg -3'
miRNA:   3'- cAUGGCA------------CGCACU--UCGGUGGc-CGUGG- -5'
22005 3' -56.9 NC_004914.1 + 60510 1.11 0.000607
Target:  5'- gGUACCGUGCGUGAAGCCACCGGCACCu -3'
miRNA:   3'- -CAUGGCACGCACUUCGGUGGCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.