miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22022 5' -58.2 NC_004927.1 + 30694 0.67 0.576906
Target:  5'- gAGCcGGGaGUccgacuCGGAACCGaGAGGGAACg -3'
miRNA:   3'- -UUGuCCC-CG------GCCUUGGC-CUCUCUUGa -5'
22022 5' -58.2 NC_004927.1 + 75842 0.67 0.535142
Target:  5'- gGGCAGGGGgCGGGG--GGAGAGAcgGCc -3'
miRNA:   3'- -UUGUCCCCgGCCUUggCCUCUCU--UGa -5'
22022 5' -58.2 NC_004927.1 + 325 0.67 0.535142
Target:  5'- gGGCAGGGGgCGGGG--GGAGAGAcgGCc -3'
miRNA:   3'- -UUGUCCCCgGCCUUggCCUCUCU--UGa -5'
22022 5' -58.2 NC_004927.1 + 465 0.68 0.514653
Target:  5'- --gGGGGGCCGGAGagaCGGAc-GGACg -3'
miRNA:   3'- uugUCCCCGGCCUUg--GCCUcuCUUGa -5'
22022 5' -58.2 NC_004927.1 + 20325 0.69 0.445771
Target:  5'- cAGCGGcGGCCcc-ACCGGAGGGAGCg -3'
miRNA:   3'- -UUGUCcCCGGccuUGGCCUCUCUUGa -5'
22022 5' -58.2 NC_004927.1 + 75803 0.72 0.310108
Target:  5'- gGGCAGGGGCCGaccGGCCcGAGAGAcggGCa -3'
miRNA:   3'- -UUGUCCCCGGCc--UUGGcCUCUCU---UGa -5'
22022 5' -58.2 NC_004927.1 + 286 0.72 0.310108
Target:  5'- gGGCAGGGGCCGaccGGCCcGAGAGAcggGCa -3'
miRNA:   3'- -UUGUCCCCGGCc--UUGGcCUCUCU---UGa -5'
22022 5' -58.2 NC_004927.1 + 435 0.75 0.187746
Target:  5'- aGACGGGGaGagacggaCGGAACCGGAGAGAcggACg -3'
miRNA:   3'- -UUGUCCC-Cg------GCCUUGGCCUCUCU---UGa -5'
22022 5' -58.2 NC_004927.1 + 75650 0.78 0.116117
Target:  5'- gGACAGGGGaCgGGGGCCGGuuAGAACa -3'
miRNA:   3'- -UUGUCCCC-GgCCUUGGCCucUCUUGa -5'
22022 5' -58.2 NC_004927.1 + 133 0.78 0.116117
Target:  5'- gGACAGGGGaCgGGGGCCGGuuAGAACa -3'
miRNA:   3'- -UUGUCCCC-GgCCUUGGCCucUCUUGa -5'
22022 5' -58.2 NC_004927.1 + 904 1.05 0.001267
Target:  5'- uAACAGGGGCCGGAACCGGAGAGAACUa -3'
miRNA:   3'- -UUGUCCCCGGCCUUGGCCUCUCUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.