miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22027 3' -54.4 NC_004927.1 + 7062 1.07 0.002317
Target:  5'- gGACUUGAGCCACACCGAGAGACAGCUu -3'
miRNA:   3'- -CUGAACUCGGUGUGGCUCUCUGUCGG- -5'
22027 3' -54.4 NC_004927.1 + 57265 0.74 0.395535
Target:  5'- cGACaaaGAGCUACgACgCGAGGGACAGCa -3'
miRNA:   3'- -CUGaa-CUCGGUG-UG-GCUCUCUGUCGg -5'
22027 3' -54.4 NC_004927.1 + 6388 0.71 0.522547
Target:  5'- -cUUUGAGCCGC-CaCGAGAGGCGuGCUu -3'
miRNA:   3'- cuGAACUCGGUGuG-GCUCUCUGU-CGG- -5'
22027 3' -54.4 NC_004927.1 + 75803 0.7 0.59717
Target:  5'- gGGCagGGGCCGaccggcCCGAGAGACGGgCa -3'
miRNA:   3'- -CUGaaCUCGGUgu----GGCUCUCUGUCgG- -5'
22027 3' -54.4 NC_004927.1 + 286 0.7 0.59717
Target:  5'- gGGCagGGGCCGaccggcCCGAGAGACGGgCa -3'
miRNA:   3'- -CUGaaCUCGGUgu----GGCUCUCUGUCgG- -5'
22027 3' -54.4 NC_004927.1 + 75403 0.68 0.693601
Target:  5'- gGGCUUGAGUgccugaaCGCAUCGAGGGugGuGUCc -3'
miRNA:   3'- -CUGAACUCG-------GUGUGGCUCUCugU-CGG- -5'
22027 3' -54.4 NC_004927.1 + 8827 0.68 0.705348
Target:  5'- cGAUaa-AGCCACGCCacGAGAGACugaacuuGCCg -3'
miRNA:   3'- -CUGaacUCGGUGUGG--CUCUCUGu------CGG- -5'
22027 3' -54.4 NC_004927.1 + 30698 0.67 0.778497
Target:  5'- -uCUUGAGCCGggaguccgacucggaACCGAGAGggaacGCGGUCg -3'
miRNA:   3'- cuGAACUCGGUg--------------UGGCUCUC-----UGUCGG- -5'
22027 3' -54.4 NC_004927.1 + 26296 0.67 0.796969
Target:  5'- ----aGAGCCACGucagCGGGAGACuGUCa -3'
miRNA:   3'- cugaaCUCGGUGUg---GCUCUCUGuCGG- -5'
22027 3' -54.4 NC_004927.1 + 75879 0.66 0.806453
Target:  5'- -----cGGCC-CAuuagaaucCCGAGAGACGGCCc -3'
miRNA:   3'- cugaacUCGGuGU--------GGCUCUCUGUCGG- -5'
22027 3' -54.4 NC_004927.1 + 69254 0.66 0.806453
Target:  5'- cGCgaGAaCCGCGCCGAGgauGGugAGCUg -3'
miRNA:   3'- cUGaaCUcGGUGUGGCUC---UCugUCGG- -5'
22027 3' -54.4 NC_004927.1 + 362 0.66 0.806453
Target:  5'- -----cGGCC-CAuuagaaucCCGAGAGACGGCCc -3'
miRNA:   3'- cugaacUCGGuGU--------GGCUCUCUGUCGG- -5'
22027 3' -54.4 NC_004927.1 + 38535 0.66 0.833793
Target:  5'- aACUUGGuaaucgaCGCAUCGAGGGuuuCGGCCa -3'
miRNA:   3'- cUGAACUcg-----GUGUGGCUCUCu--GUCGG- -5'
22027 3' -54.4 NC_004927.1 + 46978 0.66 0.842504
Target:  5'- uGACUacgagGAGCCguACACgugCGAGAGcuguCGGCCc -3'
miRNA:   3'- -CUGAa----CUCGG--UGUG---GCUCUCu---GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.