miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22028 3' -50.6 NC_004927.1 + 7778 1.11 0.002753
Target:  5'- gCUUCCAGAGGCAACGGAAGUUGCUACa -3'
miRNA:   3'- -GAAGGUCUCCGUUGCCUUCAACGAUG- -5'
22028 3' -50.6 NC_004927.1 + 26564 0.67 0.932175
Target:  5'- -gUCCGGGGugguaGCGGCGGAGGUggGUcgGCa -3'
miRNA:   3'- gaAGGUCUC-----CGUUGCCUUCAa-CGa-UG- -5'
22028 3' -50.6 NC_004927.1 + 31911 0.66 0.947633
Target:  5'- --cCCugAGGGGCGAuuCGGggGcUGUUACa -3'
miRNA:   3'- gaaGG--UCUCCGUU--GCCuuCaACGAUG- -5'
22028 3' -50.6 NC_004927.1 + 50334 0.68 0.886061
Target:  5'- -aUCCgcuGGAGGCGGCGGAgcaGGUgGCa-- -3'
miRNA:   3'- gaAGG---UCUCCGUUGCCU---UCAaCGaug -5'
22028 3' -50.6 NC_004927.1 + 53965 0.68 0.900654
Target:  5'- gUUCCAGcGGgGACGGAGGUU-CaACa -3'
miRNA:   3'- gAAGGUCuCCgUUGCCUUCAAcGaUG- -5'
22028 3' -50.6 NC_004927.1 + 73966 0.66 0.947633
Target:  5'- --aCCGcGAGcGCGACGGAacagcucgccgcAGUUGCgGCg -3'
miRNA:   3'- gaaGGU-CUC-CGUUGCCU------------UCAACGaUG- -5'
22028 3' -50.6 NC_004927.1 + 75547 0.66 0.937615
Target:  5'- uUUCCAGucgGGGUcggAugGGGAGgggucgGCUACu -3'
miRNA:   3'- gAAGGUC---UCCG---UugCCUUCaa----CGAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.