miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22029 5' -55.1 NC_004927.1 + 449 0.66 0.844804
Target:  5'- --gGACGGACGGGGa-GAgaCGGGGa -3'
miRNA:   3'- aagCUGCCUGCCCUacCUaaGCUCCc -5'
22029 5' -55.1 NC_004927.1 + 57098 0.67 0.761851
Target:  5'- uUUCGccucaGGGCGGGAUGGAgugcuacgUGaAGGGu -3'
miRNA:   3'- -AAGCug---CCUGCCCUACCUaa------GC-UCCC- -5'
22029 5' -55.1 NC_004927.1 + 248 0.68 0.741783
Target:  5'- --aGACGGACGGGcaGGGggCaGGGGa -3'
miRNA:   3'- aagCUGCCUGCCCuaCCUaaGcUCCC- -5'
22029 5' -55.1 NC_004927.1 + 75765 0.68 0.741783
Target:  5'- --aGACGGACGGGcaGGGggCaGGGGa -3'
miRNA:   3'- aagCUGCCUGCCCuaCCUaaGcUCCC- -5'
22029 5' -55.1 NC_004927.1 + 42319 0.68 0.731588
Target:  5'- gUUGGCGGcgACGGGGUaGGcaUCGAGGc -3'
miRNA:   3'- aAGCUGCC--UGCCCUA-CCuaAGCUCCc -5'
22029 5' -55.1 NC_004927.1 + 53503 0.7 0.594215
Target:  5'- --aGACGaAgGGGAUGGAUUCGAcccucguggcGGGg -3'
miRNA:   3'- aagCUGCcUgCCCUACCUAAGCU----------CCC- -5'
22029 5' -55.1 NC_004927.1 + 335 0.7 0.583611
Target:  5'- -cCGuAUGGACGGGcaGGGggCGGGGGg -3'
miRNA:   3'- aaGC-UGCCUGCCCuaCCUaaGCUCCC- -5'
22029 5' -55.1 NC_004927.1 + 58772 0.7 0.583611
Target:  5'- -cCGugGGGCGGuGUGuccucggauagaGAUUCGGGGGu -3'
miRNA:   3'- aaGCugCCUGCCcUAC------------CUAAGCUCCC- -5'
22029 5' -55.1 NC_004927.1 + 75852 0.7 0.583611
Target:  5'- -cCGuAUGGACGGGcaGGGggCGGGGGg -3'
miRNA:   3'- aaGC-UGCCUGCCCuaCCUaaGCUCCC- -5'
22029 5' -55.1 NC_004927.1 + 9062 1.07 0.00242
Target:  5'- cUUCGACGGACGGGAUGGAUUCGAGGGc -3'
miRNA:   3'- -AAGCUGCCUGCCCUACCUAAGCUCCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.