miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22031 3' -51.9 NC_004927.1 + 11507 1.12 0.002024
Target:  5'- cGCUUGUUCCCACGGCUCCAGAUGAACc -3'
miRNA:   3'- -CGAACAAGGGUGCCGAGGUCUACUUG- -5'
22031 3' -51.9 NC_004927.1 + 4388 0.68 0.8401
Target:  5'- ---cGUUCCUuacguCGGCaUCgAGAUGGACg -3'
miRNA:   3'- cgaaCAAGGGu----GCCG-AGgUCUACUUG- -5'
22031 3' -51.9 NC_004927.1 + 67780 0.67 0.873556
Target:  5'- --cUGcUCCCuCGGCgUCGGGUGAGCu -3'
miRNA:   3'- cgaACaAGGGuGCCGaGGUCUACUUG- -5'
22031 3' -51.9 NC_004927.1 + 22820 0.66 0.909653
Target:  5'- gGCg---UCCgGCGGCUUCAGcucGAACg -3'
miRNA:   3'- -CGaacaAGGgUGCCGAGGUCua-CUUG- -5'
22031 3' -51.9 NC_004927.1 + 74011 0.66 0.922183
Target:  5'- gGCUUGacgCCgAaggaGGCgUCCAaGAUGAACa -3'
miRNA:   3'- -CGAACaa-GGgUg---CCG-AGGU-CUACUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.