miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22032 5' -50.9 NC_004927.1 + 12046 0.96 0.028862
Target:  5'- aCGUCCAGAGAAGCCGACU-CAUAUACc -3'
miRNA:   3'- -GCAGGUCUCUUCGGCUGAgGUAUAUG- -5'
22032 5' -50.9 NC_004927.1 + 14771 0.69 0.850376
Target:  5'- cCGUCgCGGAGAAGCaCGacacGCUCCAcGUcGCa -3'
miRNA:   3'- -GCAG-GUCUCUUCG-GC----UGAGGUaUA-UG- -5'
22032 5' -50.9 NC_004927.1 + 17940 0.66 0.945013
Target:  5'- cCGUCCAcGGAAGaCCGgcgagaagGCUCCGUGc-- -3'
miRNA:   3'- -GCAGGUcUCUUC-GGC--------UGAGGUAUaug -5'
22032 5' -50.9 NC_004927.1 + 36564 0.68 0.882795
Target:  5'- cCGUCCGGuAGAAGuCCGuCUCCugAUAg -3'
miRNA:   3'- -GCAGGUC-UCUUC-GGCuGAGGuaUAUg -5'
22032 5' -50.9 NC_004927.1 + 62047 0.69 0.867085
Target:  5'- uCGUUCuuuGAGAcGaCCGACUCCAgcgGCg -3'
miRNA:   3'- -GCAGGu--CUCUuC-GGCUGAGGUauaUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.