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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22032 | 5' | -50.9 | NC_004927.1 | + | 12046 | 0.96 | 0.028862 |
Target: 5'- aCGUCCAGAGAAGCCGACU-CAUAUACc -3' miRNA: 3'- -GCAGGUCUCUUCGGCUGAgGUAUAUG- -5' |
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22032 | 5' | -50.9 | NC_004927.1 | + | 14771 | 0.69 | 0.850376 |
Target: 5'- cCGUCgCGGAGAAGCaCGacacGCUCCAcGUcGCa -3' miRNA: 3'- -GCAG-GUCUCUUCG-GC----UGAGGUaUA-UG- -5' |
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22032 | 5' | -50.9 | NC_004927.1 | + | 17940 | 0.66 | 0.945013 |
Target: 5'- cCGUCCAcGGAAGaCCGgcgagaagGCUCCGUGc-- -3' miRNA: 3'- -GCAGGUcUCUUC-GGC--------UGAGGUAUaug -5' |
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22032 | 5' | -50.9 | NC_004927.1 | + | 36564 | 0.68 | 0.882795 |
Target: 5'- cCGUCCGGuAGAAGuCCGuCUCCugAUAg -3' miRNA: 3'- -GCAGGUC-UCUUC-GGCuGAGGuaUAUg -5' |
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22032 | 5' | -50.9 | NC_004927.1 | + | 62047 | 0.69 | 0.867085 |
Target: 5'- uCGUUCuuuGAGAcGaCCGACUCCAgcgGCg -3' miRNA: 3'- -GCAGGu--CUCUuC-GGCUGAGGUauaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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