miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22033 3' -52.5 NC_004927.1 + 30693 0.66 0.909312
Target:  5'- -aGCCGggaguCCGACUCGGaaccgagAGGGAACg -3'
miRNA:   3'- ugCGGCagu--GGUUGAGCCg------UCUUUUG- -5'
22033 3' -52.5 NC_004927.1 + 68055 0.66 0.888508
Target:  5'- uCGUCGUCGCCGccgacgcagAUUCGGCA---AACg -3'
miRNA:   3'- uGCGGCAGUGGU---------UGAGCCGUcuuUUG- -5'
22033 3' -52.5 NC_004927.1 + 11980 0.67 0.881042
Target:  5'- -gGuuGUCACCGAgguaUgGGUAGGGAACc -3'
miRNA:   3'- ugCggCAGUGGUUg---AgCCGUCUUUUG- -5'
22033 3' -52.5 NC_004927.1 + 33429 0.67 0.881042
Target:  5'- cACGCCGUCguaAUCGAgUCGGaAGuAAACg -3'
miRNA:   3'- -UGCGGCAG---UGGUUgAGCCgUCuUUUG- -5'
22033 3' -52.5 NC_004927.1 + 66172 0.67 0.873318
Target:  5'- -gGCUaUCgACCGACUCGgGCAGGAGGu -3'
miRNA:   3'- ugCGGcAG-UGGUUGAGC-CGUCUUUUg -5'
22033 3' -52.5 NC_004927.1 + 71770 0.67 0.848671
Target:  5'- -gGCCGguaucacucCAUCGAgUCGGCAGAAcccGGCg -3'
miRNA:   3'- ugCGGCa--------GUGGUUgAGCCGUCUU---UUG- -5'
22033 3' -52.5 NC_004927.1 + 17944 0.67 0.848671
Target:  5'- aAUGCCGUcCACggaaGAC-CGGCgAGAAGGCu -3'
miRNA:   3'- -UGCGGCA-GUGg---UUGaGCCG-UCUUUUG- -5'
22033 3' -52.5 NC_004927.1 + 26304 0.68 0.839989
Target:  5'- aACGUCGUagaGCCAcgUCaGCGGGAGACu -3'
miRNA:   3'- -UGCGGCAg--UGGUugAGcCGUCUUUUG- -5'
22033 3' -52.5 NC_004927.1 + 14937 0.69 0.763452
Target:  5'- aACGuauCCGUCACCGuacucgUUCGGCGGGucGCa -3'
miRNA:   3'- -UGC---GGCAGUGGUu-----GAGCCGUCUuuUG- -5'
22033 3' -52.5 NC_004927.1 + 23184 0.69 0.753159
Target:  5'- aGCGCC---ACCGAC-CGGCAGAAGu- -3'
miRNA:   3'- -UGCGGcagUGGUUGaGCCGUCUUUug -5'
22033 3' -52.5 NC_004927.1 + 56713 0.73 0.557537
Target:  5'- cUGuuGUUAUCaAGCUCGGCGGAGAGg -3'
miRNA:   3'- uGCggCAGUGG-UUGAGCCGUCUUUUg -5'
22033 3' -52.5 NC_004927.1 + 23240 0.77 0.352316
Target:  5'- uCGCCGUCuCC-GCUCGGUcggGGAGAGCg -3'
miRNA:   3'- uGCGGCAGuGGuUGAGCCG---UCUUUUG- -5'
22033 3' -52.5 NC_004927.1 + 12766 1.09 0.002495
Target:  5'- aACGCCGUCACCAACUCGGCAGAAAACu -3'
miRNA:   3'- -UGCGGCAGUGGUUGAGCCGUCUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.