miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22039 3' -48.5 NC_004927.1 + 16615 1.12 0.003794
Target:  5'- aAUCAGCAACUCAGCAUCAUUCUCACCa -3'
miRNA:   3'- -UAGUCGUUGAGUCGUAGUAAGAGUGG- -5'
22039 3' -48.5 NC_004927.1 + 21971 0.66 0.979565
Target:  5'- aAUCAccGCAucgaggucguACUCGGCGUCAccgacUUCACCa -3'
miRNA:   3'- -UAGU--CGU----------UGAGUCGUAGUaa---GAGUGG- -5'
22039 3' -48.5 NC_004927.1 + 47334 0.67 0.971064
Target:  5'- uUCgAGaCGGCUCAGCAggcCGcUCUCAUCu -3'
miRNA:   3'- uAG-UC-GUUGAGUCGUa--GUaAGAGUGG- -5'
22039 3' -48.5 NC_004927.1 + 28527 0.68 0.96028
Target:  5'- -cCAuCAACUCGGCAuacgucUCAggacgCUCGCCg -3'
miRNA:   3'- uaGUcGUUGAGUCGU------AGUaa---GAGUGG- -5'
22039 3' -48.5 NC_004927.1 + 48592 0.68 0.947001
Target:  5'- aAUCGGCcACUCGuGguUCGggaacaUCUCACCc -3'
miRNA:   3'- -UAGUCGuUGAGU-CguAGUa-----AGAGUGG- -5'
22039 3' -48.5 NC_004927.1 + 4030 0.68 0.941993
Target:  5'- gGUCGGCucuCUCGGC-UCGUUCgaggUCACa -3'
miRNA:   3'- -UAGUCGuu-GAGUCGuAGUAAG----AGUGg -5'
22039 3' -48.5 NC_004927.1 + 22928 0.68 0.941993
Target:  5'- cGUCAGCucCUCggaAGCGUCGaugCUCACa -3'
miRNA:   3'- -UAGUCGuuGAG---UCGUAGUaa-GAGUGg -5'
22039 3' -48.5 NC_004927.1 + 2243 0.68 0.941993
Target:  5'- uUC-GCAccACUUAGCgauGUCAcUCUCGCCg -3'
miRNA:   3'- uAGuCGU--UGAGUCG---UAGUaAGAGUGG- -5'
22039 3' -48.5 NC_004927.1 + 33510 0.71 0.867291
Target:  5'- cUCGGC-GCUCAGggaGUCGUccuucuucaUCUCGCCa -3'
miRNA:   3'- uAGUCGuUGAGUCg--UAGUA---------AGAGUGG- -5'
22039 3' -48.5 NC_004927.1 + 29638 0.66 0.984096
Target:  5'- uAUCGGgAACcCGGuCGUCGUUCUCGa- -3'
miRNA:   3'- -UAGUCgUUGaGUC-GUAGUAAGAGUgg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.