miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22040 3' -53.1 NC_004927.1 + 16855 1.08 0.002855
Target:  5'- gCUAUCCUCGAUUCACUCUCCGGCCAGc -3'
miRNA:   3'- -GAUAGGAGCUAAGUGAGAGGCCGGUC- -5'
22040 3' -53.1 NC_004927.1 + 4208 0.71 0.617986
Target:  5'- -cAUCCUCGAUUCGgUCUuCCGGggcgUCGGg -3'
miRNA:   3'- gaUAGGAGCUAAGUgAGA-GGCC----GGUC- -5'
22040 3' -53.1 NC_004927.1 + 3884 0.71 0.649649
Target:  5'- -cAUCCUcccaauaCGAUUC-CUCUCCGGCUu- -3'
miRNA:   3'- gaUAGGA-------GCUAAGuGAGAGGCCGGuc -5'
22040 3' -53.1 NC_004927.1 + 27802 0.68 0.7872
Target:  5'- -cGUCCUCGuuguagUCACcgcccugcgCUCgGGCCAGu -3'
miRNA:   3'- gaUAGGAGCua----AGUGa--------GAGgCCGGUC- -5'
22040 3' -53.1 NC_004927.1 + 58529 0.66 0.890262
Target:  5'- gCUA-CCUCGAUgcUCGCUa--UGGCCGGu -3'
miRNA:   3'- -GAUaGGAGCUA--AGUGAgagGCCGGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.