miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22041 3' -55 NC_004927.1 + 74444 0.65 0.84215
Target:  5'- aGCCCGccuCGAuGAuGGugGGCACGCUc -3'
miRNA:   3'- cUGGGCuu-GCU-CUcCUugUCGUGCGG- -5'
22041 3' -55 NC_004927.1 + 56200 0.66 0.815732
Target:  5'- -cCCCGGACGGGAaguugugggucGGuaguCGGCAgGCUa -3'
miRNA:   3'- cuGGGCUUGCUCU-----------CCuu--GUCGUgCGG- -5'
22041 3' -55 NC_004927.1 + 58968 0.66 0.815732
Target:  5'- -gUUCGGGCGcGGGGAugAGUAUGCg -3'
miRNA:   3'- cuGGGCUUGCuCUCCUugUCGUGCGg -5'
22041 3' -55 NC_004927.1 + 32401 0.66 0.806546
Target:  5'- --gUCGAACGucAGAacacGGGGCGGCGCGUCc -3'
miRNA:   3'- cugGGCUUGC--UCU----CCUUGUCGUGCGG- -5'
22041 3' -55 NC_004927.1 + 52230 0.66 0.806546
Target:  5'- cGACCCGGACaacGAuGGGCAGguCGCg -3'
miRNA:   3'- -CUGGGCUUGcu-CUcCUUGUCguGCGg -5'
22041 3' -55 NC_004927.1 + 61662 0.68 0.717274
Target:  5'- aGCUCGAACGAGGGGAGuCucGCugagGgGCCg -3'
miRNA:   3'- cUGGGCUUGCUCUCCUU-Gu-CG----UgCGG- -5'
22041 3' -55 NC_004927.1 + 61489 0.68 0.696282
Target:  5'- cGACCCGGACGcuacGGuGggUAGCACGg- -3'
miRNA:   3'- -CUGGGCUUGCuc--UC-CuuGUCGUGCgg -5'
22041 3' -55 NC_004927.1 + 53485 0.69 0.675054
Target:  5'- cGACCCucguGGCGGGGGuGAACGGCGuuucCGUCu -3'
miRNA:   3'- -CUGGGc---UUGCUCUC-CUUGUCGU----GCGG- -5'
22041 3' -55 NC_004927.1 + 61558 0.69 0.664377
Target:  5'- aGACCCGAGCGAGcuGAcuccCGGCGCugGCg -3'
miRNA:   3'- -CUGGGCUUGCUCucCUu---GUCGUG--CGg -5'
22041 3' -55 NC_004927.1 + 57257 0.69 0.632213
Target:  5'- aGCUacGACGcGAGGGACAGCAaUGCCg -3'
miRNA:   3'- cUGGgcUUGCuCUCCUUGUCGU-GCGG- -5'
22041 3' -55 NC_004927.1 + 71117 0.7 0.610753
Target:  5'- uGACCCucccGACGAGGGcGAGCGGauggacuuCGCCg -3'
miRNA:   3'- -CUGGGc---UUGCUCUC-CUUGUCgu------GCGG- -5'
22041 3' -55 NC_004927.1 + 303 0.72 0.495639
Target:  5'- cGGCCCGcGCGGGgcAGGGGCAGgG-GCCg -3'
miRNA:   3'- -CUGGGCuUGCUC--UCCUUGUCgUgCGG- -5'
22041 3' -55 NC_004927.1 + 75820 0.72 0.495639
Target:  5'- cGGCCCGcGCGGGgcAGGGGCAGgG-GCCg -3'
miRNA:   3'- -CUGGGCuUGCUC--UCCUUGUCgUgCGG- -5'
22041 3' -55 NC_004927.1 + 30682 0.72 0.485612
Target:  5'- cGACUCGGAacCGAGAGGGaacGCGGUcgggcuugACGCCc -3'
miRNA:   3'- -CUGGGCUU--GCUCUCCU---UGUCG--------UGCGG- -5'
22041 3' -55 NC_004927.1 + 51343 0.74 0.382602
Target:  5'- cGACCCGGACGAGAGGAuuCAGaauugggacUugGUg -3'
miRNA:   3'- -CUGGGCUUGCUCUCCUu-GUC---------GugCGg -5'
22041 3' -55 NC_004927.1 + 62621 0.74 0.382602
Target:  5'- cGGCCCGAACGGGGGcGACA--ACGCUg -3'
miRNA:   3'- -CUGGGCUUGCUCUCcUUGUcgUGCGG- -5'
22041 3' -55 NC_004927.1 + 148 0.74 0.357133
Target:  5'- aGCCCGAGCGAcGGGGGACAGgggacggGgGCCg -3'
miRNA:   3'- cUGGGCUUGCU-CUCCUUGUCg------UgCGG- -5'
22041 3' -55 NC_004927.1 + 75665 0.74 0.357133
Target:  5'- aGCCCGAGCGAcGGGGGACAGgggacggGgGCCg -3'
miRNA:   3'- cUGGGCUUGCU-CUCCUUGUCg------UgCGG- -5'
22041 3' -55 NC_004927.1 + 73968 0.81 0.135635
Target:  5'- aGACCgCGAGCGcGAcGGAACAGCuCGCCg -3'
miRNA:   3'- -CUGG-GCUUGCuCU-CCUUGUCGuGCGG- -5'
22041 3' -55 NC_004927.1 + 16976 1.13 0.000935
Target:  5'- cGACCCGAACGAGAGGAACAGCACGCCg -3'
miRNA:   3'- -CUGGGCUUGCUCUCCUUGUCGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.