miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22041 5' -54.3 NC_004927.1 + 52480 0.66 0.876846
Target:  5'- aUGGCGGCuaUGAcGCUCUugAcUCcgaGGGc -3'
miRNA:   3'- gGCCGCCG--ACUaCGAGAugUuAG---CCC- -5'
22041 5' -54.3 NC_004927.1 + 14238 0.67 0.809634
Target:  5'- aCCGGgGGUUGuccAUGaacgUCgugucGCAAUCGGGg -3'
miRNA:   3'- -GGCCgCCGAC---UACg---AGa----UGUUAGCCC- -5'
22041 5' -54.3 NC_004927.1 + 71733 0.69 0.731219
Target:  5'- gCGGUGGCUGA-GCgaaucucucaggUCUACAA-CGGa -3'
miRNA:   3'- gGCCGCCGACUaCG------------AGAUGUUaGCCc -5'
22041 5' -54.3 NC_004927.1 + 42825 0.69 0.710464
Target:  5'- -aGGuCGGUgaGGUGUUCUuccCAAUCGGGg -3'
miRNA:   3'- ggCC-GCCGa-CUACGAGAu--GUUAGCCC- -5'
22041 5' -54.3 NC_004927.1 + 22816 0.69 0.710464
Target:  5'- uCCGGCGGCUucaGCUCgaACGAcUCGGu -3'
miRNA:   3'- -GGCCGCCGAcuaCGAGa-UGUU-AGCCc -5'
22041 5' -54.3 NC_004927.1 + 72619 0.7 0.657477
Target:  5'- gUCGGCGGaUUGGUGUUucCUACAuaAUCGGu -3'
miRNA:   3'- -GGCCGCC-GACUACGA--GAUGU--UAGCCc -5'
22041 5' -54.3 NC_004927.1 + 67798 0.71 0.613552
Target:  5'- gCGGCGGCgUGAcgcagacUGCUCccucgGCG-UCGGGu -3'
miRNA:   3'- gGCCGCCG-ACU-------ACGAGa----UGUuAGCCC- -5'
22041 5' -54.3 NC_004927.1 + 50325 0.72 0.529071
Target:  5'- -aGGCGGCgGAgcagguggcagucUGCUCUcgaAAUCGGGg -3'
miRNA:   3'- ggCCGCCGaCU-------------ACGAGAug-UUAGCCC- -5'
22041 5' -54.3 NC_004927.1 + 16941 1.13 0.001137
Target:  5'- uCCGGCGGCUGAUGCUCUACAAUCGGGg -3'
miRNA:   3'- -GGCCGCCGACUACGAGAUGUUAGCCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.