miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22043 5' -57.9 NC_004927.1 + 19795 1.07 0.001362
Target:  5'- gCGACCGGCGGGAAUCGAACCACGCCUu -3'
miRNA:   3'- -GCUGGCCGCCCUUAGCUUGGUGCGGA- -5'
22043 5' -57.9 NC_004927.1 + 20949 0.76 0.210178
Target:  5'- gGACgGGC-GGAAUCGAACCGC-CCUa -3'
miRNA:   3'- gCUGgCCGcCCUUAGCUUGGUGcGGA- -5'
22043 5' -57.9 NC_004927.1 + 21523 0.74 0.269244
Target:  5'- uGACCGGCGGGAGUgaUGAcCUugGCg- -3'
miRNA:   3'- gCUGGCCGCCCUUA--GCUuGGugCGga -5'
22043 5' -57.9 NC_004927.1 + 10312 0.72 0.333225
Target:  5'- aCGuCgCGGCGGGGcuUCGAcuuuCCACGCCg -3'
miRNA:   3'- -GCuG-GCCGCCCUu-AGCUu---GGUGCGGa -5'
22043 5' -57.9 NC_004927.1 + 53756 0.7 0.462737
Target:  5'- aCGACCGGCGGuGA---GAACCGCGa-- -3'
miRNA:   3'- -GCUGGCCGCC-CUuagCUUGGUGCgga -5'
22043 5' -57.9 NC_004927.1 + 35169 0.68 0.58286
Target:  5'- --cUCGGCGGGGccGUCguacuguccgaGAACCACGUCUu -3'
miRNA:   3'- gcuGGCCGCCCU--UAG-----------CUUGGUGCGGA- -5'
22043 5' -57.9 NC_004927.1 + 53486 0.67 0.635094
Target:  5'- uCGACCcucguGGCGGGggU-GAACgGCGUUUc -3'
miRNA:   3'- -GCUGG-----CCGCCCuuAgCUUGgUGCGGA- -5'
22043 5' -57.9 NC_004927.1 + 45979 0.66 0.676881
Target:  5'- aCGACgGGCGGGug-UGAGCCu--CCUa -3'
miRNA:   3'- -GCUGgCCGCCCuuaGCUUGGugcGGA- -5'
22043 5' -57.9 NC_004927.1 + 64723 0.66 0.707849
Target:  5'- uGGCCGGauugaGGGAAUCGAggaaGCaaacgagaACGUCg -3'
miRNA:   3'- gCUGGCCg----CCCUUAGCU----UGg-------UGCGGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.